Sander lucioperca (pikeperch): 116047917
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Entry
116047917 CDS
T07345
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03013
Nucleocytoplasmic transport
sluc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116047917 (upf2)
03015 mRNA surveillance pathway
116047917 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116047917 (upf2)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116047917 (upf2)
mRNA cycle factors
P-body specific factors
116047917 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
116047917
NCBI-ProteinID:
XP_031152814
Ensembl:
ENSSLUG00000005715
LinkDB
All DBs
Position
20:complement(19017182..19040372)
Genome browser
AA seq
1278 aa
AA seq
DB search
MPAERKRSVNMDEKDVCTFNSKEKEKDRDGERRPASARDKAKDEAKVSGKKDSGKEEKRK
RLEEEKKKKEEKERRKKEEEKQKAEEEQKKKEEEEKRQQEEEERKLQEEEVKRQREEEAA
LLKEKEEGHQLHQEAWERNQCRKELRSKNQNAQEGRPEEAFFSRLDSSLKKNTAFVKKLR
TLTEQQRDSLSNDFASLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGTDR
ETHTHVSVVISFCKHCGDDIAGLLPRKVKLAAEKFGLGFPPSEIISTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNTERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADL
LDENMPELPVDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLVDLKAFVP
AILFKDNEKSSQGKDKDEAKDGKEGKDAASTTEELELELEALDIADEPMELEGPDEAENE
ELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNR
RKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHMRKKDQINIE
TKNKTVRFIGELAKFKMYSKTDTLHCLKMLLSDFTHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWHDPEVKSYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGI
NQDGSPSALDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSIDV
WTKDHPFPIDIDYMITDTLELLRPKMRLSCSLEEATKQVTDLEREVLYKLGLAMEKDGRS
SAMSEGEVLDEEDDDGDDDEEGGAETEEQSGNESEMNEQEEDEGSENEEEEREEEEEENT
DYLTDSNKENETDEDNNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGETVKVH
QLDVAIPLQLKSQLKKGGSREQCIGEADSDISDTMQFVMLTRKGNKQQYKILNVPLSSHL
AANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQH
PKGAPNADLIFKTGGRRR
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaacgcaagcgctccgtaaacatggacgagaaagacgtttgcaccttcaat
agcaaggaaaaagagaaggacagagatggcgagagaagaccggcatctgcccgagacaaa
gcaaaagatgaggccaaagtgagcggcaaaaaagacagcggcaaggaggagaagagaaag
cgcctcgaggaggagaagaagaagaaagaggaaaaggagcgaagaaagaaagaggaggaa
aagcagaaagcggaggaggagcagaagaagaaagaggaggaggagaagagacagcaggag
gaggaggagcggaagcttcaagaggaggaggtcaaaaggcaacgtgaggaggaggcagct
ctcctcaaggaaaaggaggaggggcatcagctgcaccaggaggcctgggaacgcaatcag
tgcaggaaggaactccgcagcaagaaccagaacgcccaagagggtcggcccgaagaggcc
ttcttcagccgactggactccagccttaaaaagaacaccgcctttgtcaagaagctgcgt
acgctcaccgaacagcaacgagactcgctctccaatgactttgcctcactgaacctcagc
aagtatatcggcgaggctgtgagctctgtcgtggaggccaagctgaagatctccgacgtc
ggctgcgccgtccatctctgctccctcttccaccagcggtacgctgagttcgctccattg
ctgctccaggcgtggaagaagcactttgaagcgaggaaggaggacaaggcgcccaacgtg
agcaagctgcgcaccgacctgcgctttatcgccgagctcaccatcgtcggcctcttcacc
gacaaagaagggctttcgctgatttacgagcagctgaagaacattatcgggaccgaccgg
gagacgcacactcacgtgtcggtggtaatcagcttctgtaagcactgtggggatgacatc
gctggcctgttgccccgcaaggtgaaactagctgcagagaagttcggtttgggcttccca
ccgagcgagataatcagcacggagaaacagcagcccttccagaacctgctacgggagtac
ttcacatcactcaccaaacacctgaagaaggaccaccgggagctgcagaacactgagagg
cagaacaggcgtatcctacattccaaaggggagctgagtgaggataggcacaagcagtat
gaagagtttgccacttcctaccagaagctgctggcgaacacccagtccctggctgatctg
ctggatgaaaacatgcccgagctgcccgtggacaagactgtgcaggaggagcacggcccc
ggcattgacattttcacccctggaaagcccggagagtatgacctggagggagggatctgg
gaagatgaagacgctcgtaacttctacgagaacttggtggacctgaaggccttcgtccct
gccatcctcttcaaggacaacgagaagagcagccaagggaaagacaaggatgaagccaaa
gatggcaaagaggggaaagacgcggccagcaccacagaggagctggagctggagctggag
gctctggacatcgcagatgaacctatggaactggagggaccagacgaggcagagaatgaa
gaactggccaaaaaactgctggatgagcaagaacaagaggatgaagaggccaacacaggg
tcccatttgaagctaatcgtggacgccttcatccaacagctccccaactgtgtcaacaga
gacctcatagacaaggctgccatggacttctgcatgaacatgaacaccaaatccaacagg
aggaagctcgtccgagccctcttcactgtccccaggcagaggttggatcttctgcccttc
tactctcgcctggtggcaacccttcatccctgcatgtcagacgtggctgaggacctttgc
tccatgctgaagggagacttcaggtttcacatgcggaagaaggaccaaatcaacattgag
acaaaaaacaaaacagtcagatttatcggggaactggccaagttcaaaatgtactcaaaa
acggacacgcttcattgtctcaagatgctgctgtctgatttcactcatcaccatatagag
atggcctgcacactgctggagacctgcggccgcttcctcttcagatcccccgaatctcac
ctgcgtaccagcgtcttgctggagcaaatgatgcgtaaaaagcaggcccagcatctggac
gcccgctatgtcacgatggtggagaacgcctactactactgcaaccccccacccatggag
aagacggtgaagaagaagaggcccccgctgcaggagtacatccgcaagctgctctacaag
gacctgtccaaggtcaccacggagaaggtgctgcggcagatgcgcaagctgccctggcac
gaccccgaggtcaagagctacctgatctgctgcatggtcaacatctggaacgtcaagtac
aacagcatccactgtgtggccaacctgctggccggcctggtggcctaccaggaggacgtg
ggcatccacgtggtggacggagtgctggaggacatccgactgggcatggaggtcaaccag
cccaagttcaaccagcggcggatcagcagcgccaagttcctgggcgagctctacaactac
cgcatggtggagtcggccgtcattttccgcaccctcttctccttcatctcctttgggatc
aatcaggatggcagccccagcgcgctggaccctccggagcacctgttccgcatccgcctg
gtctgcactctgctggatacctgcggccagtactttgaccgaggctccagcaagaggaag
ctggactgtttcctcatctacttccagcggtacatctggtggaaaaagagcattgatgtt
tggaccaaggaccacccattccccatcgacattgactacatgatcactgacaccctggag
ctgctcaggcccaagatgaggctcagctgctccttggaggaggccaccaaacaggtcacc
gacctggagagggaggtgctctacaaactaggtctggccatggagaaggacggtcgctcc
agtgccatgagcgagggcgaggttctcgacgaggaagacgacgatggcgatgacgacgaa
gagggaggtgcagagactgaggagcagtcgggcaacgagagtgaaatgaacgaacaggaa
gaggatgaagggtctgagaacgaagaagaggagagggaggaagaggaagaagagaacacc
gactacctgaccgactccaataaagaaaatgagactgatgaggacaacaatgaggtgacc
atccgcggcggtggactgaagcacgtggcctgcgccgaggacgaggacttcattcaggct
ctggataaaatgatgctggagaacctgcagcagcgcagcggcgagacggtgaaggtgcac
cagctggacgtggccattccactgcagctgaagagtcagctgaagaaggggggctccaga
gagcagtgcatcggggaggcagactcggacatctccgacaccatgcagttcgtcatgctg
acacgcaagggcaacaagcagcagtataagatcctgaacgtgcctctgtcatcccacctg
gcggcaaaccacttcaaccagcagcaagccgaacaggaggagcgcatgaggatgaagaaa
ctcaccctggacatcaatgagagacaggagcaggaggactaccaggagatgatgcagtcc
ctcgcacagcgtccggctccggccaacaccaaccgggagcgccggcctcgctaccagcac
ccgaaaggcgctcccaacgccgacctcatcttcaagaccggaggaaggagacgctga
DBGET
integrated database retrieval system
