Sander lucioperca (pikeperch): 116048305
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Entry
116048305 CDS
T07345
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116048305 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sluc04131
]
116048305 (scarf1)
Membrane trafficking [BR:
sluc04131
]
Endocytosis
Phagocytosis
Scavenger receptors
116048305 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
JAG1-like_EGF2
Motif
Other DBs
NCBI-GeneID:
116048305
NCBI-ProteinID:
XP_031153173
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All DBs
Position
5:24752571..24760460
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AA seq
917 aa
AA seq
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MKLLLRALSALLCFSLSSQTLDPDGRNVCHNIRDPSTLVCCTGWRQEGKECTTPVCEGEQ
ACLKDEICVYPGVCRCPPGYYGAHCKTRCPAEFWAPDCRQVCQCFPHGRCHPVTGECTCN
PNRWGPLCQYACKCARNGHCHPVHGNCTCNEGWWMSTCSKPCQCVSGGSVGPGCDQLTGR
CQCNSGHWGLKCPFTCNCYLSPCNQRIGVCECESGWWGPNCDRRCNCDLTHSSCDQANGQ
CLCHAGYQGLFCNQPCEAGKYGSGCKMSCGYCKDNQLCSATDGACDACESGWNGTRCDHP
CPAGSYGDGCQEKCPRCRNNELCDPITGKCWRCDPGWTGPRCEEACSNRTFGDACSFLCS
PCFHGNCHHVTGRCVCQPGFQGESCNSSCPALQFGLNCSSVCDCGEGGGCDPVTGVCPNS
GRAAVLAGVLVPLFLLLLAVLCCCLCCGGGPVDGKDRATVADGGLSVRMKYHVYSVLANI
GAALPCISDWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTEGSSFDTDEEEGEALYCV
PPREDIPSVAGGEFHEMSSKCNMFLDPSGFSSEDITSAFNIPRTSSIAKSKRPSVSFAEG
TRFSPKERRGSAQDPSALPGHSRNKPKSPWGVLMLSALQSQGSAARTGDEDGAEGEEGED
EVDVQATDNQESSCEAGDQEVDRTSSRATLQVPGASGRRRTMSNTAAHKGTQLPTSASDA
PVGVLNKVTTVYVTVGKAGRPVSKTETSSEGPVQAMLRRLGSLQRQREQESGRPKPKGAE
GITKPPRRKLGARASVWEEGGTPGSEVGICKPIRRKHASLNSSDTVGANDTPSSESSTPK
RPLSSNLQSVLELASADSGSDLRAEGGDLSTGKTEGTYLTVGPAGDTVSLTEVIANEGAV
VSVIDEPCYENVIIKHS
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttctccttagagctctgagtgctctgctctgcttctcgctgtcctcacaaaca
ctggatcctgatgggaggaacgtctgccacaatatcagggacccctccaccctggtctgt
tgcactgggtggcgtcaagagggaaaagagtgcaccacacctgtgtgtgagggtgagcag
gcctgtctgaaggatgagatctgtgtgtatcctggagtgtgtcgctgcccacctggctac
tatggagctcactgtaaaacacgctgtcctgctgagttctgggctccagactgtcgccag
gtgtgtcagtgcttcccacacggccgctgtcaccccgtcaccggtgagtgcacttgcaac
cccaaccgctggggtccgctgtgtcagtacgcctgcaagtgcgcccggaacggccactgc
caccccgtccatggaaactgcacctgcaacgagggctggtggatgtcaacctgctccaag
ccgtgccagtgcgtcagcggggggtctgtgggccccggctgcgaccagctaacaggccgg
tgtcagtgcaacagcggccactgggggctgaaatgtcccttcacttgcaactgctatctg
tcgccatgtaatcagcgtattggtgtgtgtgagtgcgagtcaggctggtggggtcccaac
tgtgaccgccgatgtaactgtgacctcacacacagcagctgtgaccaggccaacgggcag
tgcctgtgccacgcagggtaccagggtctcttctgcaaccaaccctgtgaagctgggaag
tacggcagtggttgtaaaatgagttgtggttactgtaaagacaaccagctctgctctgcc
actgatggcgcctgtgatgcctgtgagtccggctggaacggtacacgatgcgaccacccg
tgcccggctggttcctatggtgacggctgccaggagaagtgtccgcgctgcagaaataac
gaactctgtgaccccataactgggaaatgttggaggtgtgaccctggatggactggaccg
aggtgtgaggaggcctgctctaacaggacgtttggagatgcctgcagcttcctgtgtagc
ccttgtttccatggtaactgccatcatgtgacaggaagatgtgtctgtcagccaggcttt
cagggagagagctgtaacagcagctgccctgccctgcaatttggcctcaactgttcgtcc
gtctgtgactgtggtgaggggggcggctgtgacccagtcactggtgtctgccccaacagt
ggcagagctgcagtactagcaggtgtgctggttcctttgttcctgttgctgcttgctgtc
ctctgctgctgtttatgttgtggaggaggtcctgttgatggcaaagacagggcgactgtg
gctgatggcggcttgtcagttcggatgaaatatcacgtctacagcgtcctggctaacatc
ggtgctgccctcccctgtatttctgattggtcctctggcctgcctcgtgtcactgtgtct
caccatgacccagagctgacgttcaaccacagcttcattgagcctccttcctctggctgg
gtgactgaggggtcgtccttcgacactgatgaggaggagggagaggcgctctactgtgtc
cctccaagagaagacatcccgtcggtggcgggcggcgagttccacgagatgagctcgaag
tgtaacatgttcttagacccatctggcttcagcagtgaggatatcacctcggccttcaac
atccctcgcacctccagcatcgccaagtccaagaggccgtctgtctcttttgcagagggc
acgcgctttagccccaaggagaggcgtggctcggctcaggacccaagcgctctccctgga
cactcacgcaacaaaccaaagtcaccgtggggagttttgatgctgtctgccctccaaagt
cagggaagtgcagctagaactggggacgaagatggagccgagggcgaggagggggaagat
gaagtggatgtgcaggcaacagacaatcaggaatcaagctgtgaggcaggggaccaggaa
gtagacagaacctcttcccgggccaccctccaggtccctggggcatcaggacgaaggcgg
actatgtccaacacagctgctcataaagggacccagctgccaacatctgcctctgatgct
ccggtgggggtcttaaataaggtcaccacagtgtatgtgactgtgggtaaagcaggtagg
cctgtgtcgaagacggagacgagctctgaaggccccgtccaagccatgctgcggcgactc
ggcagcctccagagacaaagggagcaggagtctggcaggcccaagcctaaaggagctgaa
gggattaccaaaccacccaggaggaagctcggagctcgggcgagtgtgtgggaggaggga
gggacacctggaagcgaagttggcatatgtaagccaatcaggagaaagcatgcttctctc
aactcctctgacacagttggtgctaatgacactccatcatcagagagcagcactccaaaa
aggcctctgtcgtccaatttgcagagcgtgctagagttggcttcagctgattcagggtca
gatctgagggctgagggtggtgacctcagtacaggaaaaactgagggcacatacctaact
gtgggaccagccggagacactgtgagtctcactgaggtcatcgccaatgaaggtgcagtg
gtcagtgtgattgatgaaccctgctatgaaaatgtcattattaaacactcataa
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