Sander lucioperca (pikeperch): 116048754
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Entry
116048754 CDS
T07345
Symbol
tnrc6b
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116048754 (tnrc6b)
03036 Chromosome and associated proteins [BR:
sluc03036
]
116048754 (tnrc6b)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116048754 (tnrc6b)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116048754 (tnrc6b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
116048754
NCBI-ProteinID:
XP_031153831
LinkDB
All DBs
Position
22:complement(6425620..6450595)
Genome browser
AA seq
2148 aa
AA seq
DB search
MEDKKRKKDDKRKREASQKVTEQKNKVPDLTKPASAQSPVTQSSSASPSPGPTPSASPSP
ATLGPGSAATPSQGGNNAKRLAVANGQPTSTTISSSTAGALSAAGNGSTSSGGGAQAPQQ
QPRYMPREVPPRFRCQQDHKVLLKRGQPPLSSMLLGGGGGGGGGGDGPNANMAAVSDSGA
AASSLALTSSSVAASTTTSNYANSMWGASSGSQASSQGREKVIVDGNDLEEWPSIAGSDG
GGASFTGAGGGSSSSSNNNNGMPVNSISASGNQSSPTSSFSLPNECMQSSNGVAWGMAAS
QGHLGGGNAVAAAGPLLQQPSSLSKASAVPGSHDASGPVEGSSGIPGANFNPNANPSAWP
ALVQQDGPAAAGDGGPSSFHHQGPGGSLSANNSASLGLGLGGAAVGVLGGHPPLSVNQSS
THQRQLHQMQSRDREMGGGKWDSESVGPKNAGGEGIGGGMDRGVGGGEMSVGDHSLTSSW
RGQSSYSAANSKTGASRTDGWEGGAGGTGGFGAAEGDNGTSGWGYPSSTTGVNAWGSAGT
GANSSQTSGVSQGGWGSSGVGGERGVSGVDWGGSSTSTGGANPGGDGIGGACSSNSSSSG
GSTAGNPPATSSSSSTATTTTRAWDNQKGESETGEWGGGVDRQGAQGGSSSSGGNSRNGS
RSNSSHSRPPRSAPNAEAALQNLLSRSDLDPRVLSNTGWGQTQIRQNTSWEFEEHGGQIK
VGSSSTTSKHASSLGGSSQYSGGPRTLMTDSMGPGVNPSLVPSAGSPGEGWESSSNSSSS
GASLSGRAPPPSGPNMRNLGVSQSGPVNTTAPGIGSGAMPGHSQQGKATGWGGGGMGAGD
GQQAKGWGNEEWRDSSRGGNGGGWGDLGQQGDPVSGGWGGNKEEKGTGGWKEMGGNGGGS
GWGSGQKAGAGRDWGEQQSKSNSGGGGWENERKNGGGNSGGDSGVGSWGSWDDGAPRRTW
GAGGTGGGGSGGGGVGVAGGMGSKPHQSWSGGNKMHQMPNSQPGSITGPPAQLQQSQPRN
QHPQRQQALDQGAMQGGGGRKPISQAQNQNQSSGWTSGPIPGGSVGGGSSSEPSGWEEPS
PQSISRKNEIDDGTSAWGDPTHYNYKPVNLWDKNSAPAGQQPHDQPQPQPQPQAQQQQPQ
APPIQQQPSRQAAGLGGNRDFNTGHGPGKTSAIGPSGWSGTSPTSPSVDNGTAAWGKTTD
APTGWGEPDDAGGKTTGWGNPSPIPTKSGSKSMQDGWGDKEGSVAASRHSSWEEEEEGGG
GGMWNSAGSQGSGSSWGQGSNGGWGQNHTGKKPSNKGPLKAGGGDSWMSPINRQFSNMGL
LNDDPSGPNIDLAPGSLQEKKMDAEKRGMGMGMNDYNGDMRKGGRGGGGMAYRPPGSKEA
APGDAGSYYDKTLPLTNQDWCLGEEGPCSLYSPPTVYKPHSLFNHTIPFRQGSHSIFGSS
GGMAQSRHQPSVPPMNQSPGIRAQVPHQFLSPQVPGSVLKQMPPPSGSVGGVGGVGGVAG
VGGGVFPPQLSPQHIAMLSSIYPPHIQFQLACQLLLQQQQQQPQQQQQQLLQNQRKFTPN
VRQQADPQQLARIMAVLQQQRQQQQVGSLGGSSKLSPSHHGGGGGPKLPGADTLHHPGLA
GSVADLHQKTLGPYSAGFGSGVNLPGLDLGGSVVGGPGGMKDLGIQQSRFKWMMEGHSSP
DTSSPENAFHKNGPVPPMKMPGGSPYSQYDMMVGDGLGDNWHRTPGNKMGTKPTPTPSWP
PEFQPGVPWKGIDRVDPDSDPYMTPGSMMGNAVSPNLNDTEHQLLQDNTDPTPPLNTLLP
SPGAWPYSASDSPLNHAHNSAKYIDYKTSWPPEPIGHKSWKATRGSSQNQLSQLSRPPPG
LASQKQPSPSPWSGGAPRLAGRGWASGSSTTASTWSDGSSRESCWLVLSNLTPQIDGSTL
RTICMQHGPLLTFHLGLTQGTALIRYSSKQEAAKAQSALHMCVLGNTTILAEFVSEEDVA
RYIAHSQAGGAGSGGTTAGSAGSGPTASSAVGANGNGGSCERGGAGSSSGGGVEGGSTAG
GAGNGGAGPSSSGWQSLDSTGSSSDQSSTQGPGLGIFTQWSSNGTGVGGAGGAEAGRQGL
WGGMGGMSGAGYPSSSLWGSPALEDRHQMGSPASLLPGDLLGGGADSI
NT seq
6447 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaggaaaaaagacgacaaaaggaaaagggaagcctctcagaaggtc
acagaacaaaaaaacaaagtgccagacttgaccaagccggcatctgcccagtctcctgtc
actcagagcagctctgcctcccccagccctggacccaccccctctgcctccccatcccca
gccaccttgggccctggcagtgctgccaccccgtcacagggcggcaacaatgccaagcgc
ctggcggtggccaacggacagcccacctccaccaccatttcttcctccaccgctggcgcc
ctcagtgctgccggaaacggcagtacaagtagcggaggcggtgcccaggcgcctcagcag
caaccgcgctacatgccgagagaagtgccgccgcgattccgctgccagcaggaccataaa
gtgctactgaagaggggtcagccgccattgtcctccatgctgctgggagggggaggagga
ggaggaggaggaggagatggccccaatgcaaacatggctgctgtctcagattctggtgca
gctgcctcctcattggccctcacctcatcatcagttgctgcttctactactacttctaat
tatgcaaattccatgtggggggcgagctcaggcagccaggcctcctctcagggcagggag
aaggtgatcgtcgatggcaacgacctggaggaatggcctagcatcgctggcagtgatgga
ggaggagcttctttcaccggggctggagggggcagcagcagcagcagcaacaacaacaac
ggaatgcctgtgaacagcattagtgcctctggcaaccaatcctcacccacttcctcattc
tctttgcccaatgaatgtatgcagtcgtccaacggtgtggcgtgggggatggctgcctcc
cagggtcatcttggaggagggaatgcggtagctgcagctgggcctctgctacaacagccc
tcctcactttccaaagcctccgctgtgccagggagccatgacgccagtggccccgtcgaa
ggcagcagtgggattccaggtgccaacttcaatccaaatgccaacccttcggcctggcct
gccctggtgcagcaggatgggcccgctgctgcaggggatggaggtccatcttccttccat
caccagggccctggagggtctttgtctgccaacaactccgcttccctgggcctggggctg
ggaggcgcggcagtcggggtgctggggggtcacccacctttatctgtgaatcaatcaagc
acccatcagcggcaacttcaccaaatgcaatcacgagacagagagatgggaggggggaag
tgggacagcgaatcagtgggaccaaaaaacgcagggggggaaggaattgggggaggaatg
gaccgtggtgttggaggaggcgagatgagtgtgggagaccacagcctcacctcctcatgg
agaggccagtcttcttactctgcagctaactccaaaacgggtgcctcaagaactgatgga
tgggagggtggagcaggtggcacagggggattcggagctgctgaaggagataatgggaca
tctggttgggggtatccaagttccactactggggttaatgcttggggtagtgctggaact
ggggcaaacagtagtcaaacctccggggtatctcagggagggtgggggtcatcaggagta
ggaggggagagaggggtttctggtgttgattggggtgggagctccaccagtactggtgga
gctaatccaggaggtgatggaattggtggagcctgcagcagtaacagcagcagtagtggg
ggcagcaccgctggcaacccccctgccacctcctcctcttcctcaacagccaccactacg
accagagcttgggacaatcagaagggggagagtgaaacaggggaatggggtgggggagta
gacagacagggagcacagggaggatcctcatccagtggtggaaattccagaaacgggagc
aggtctaacagtagtcacagtcgtcctccccgctctgcacctaatgctgaagctgcctta
cagaacctgcttagccggtctgatttggaccctcgggtcctgtccaacacaggctggggc
caaacacagatccgacaaaacacgtcctgggagtttgaagaacacggaggacagattaaa
gttggatcgtcatcaactacatcgaaacacgcatcttctcttggtggttcttctcagtat
tctggaggacccagaactctaatgactgattctatgggtccaggggtcaatccttccctg
gttccatctgctgggtcccccggagagggctgggaaagcagcagcaacagtagcagtagt
ggggcctctctgtctgggagagccccaccaccgtcaggccccaacatgaggaatcttggc
gtctcacaatctgggccagtgaacacaacggcacctggtatagggtcaggggcaatgcca
ggacatagccagcaggggaaggctacaggctggggtggaggagggatgggggctggggat
ggccagcaggccaagggctgggggaatgaggaatggagagacagtagtagaggaggaaat
ggaggaggatggggtgatcttgggcaacagggagacccagtgagtggaggctggggagga
aataaggaggagaaagggacaggggggtggaaagaaatgggaggcaatggaggagggagt
gggtggggatcaggacagaaggctggggcaggtagggattggggagagcaacagtctaaa
tcaaatagcggaggagggggatgggagaatgagagaaagaatggaggaggaaactcaggt
ggggattcaggtgtgggtagttgggggagctgggatgatggtgctcctcggagaacctgg
ggagcagggggcacagggggaggagggagtggaggagggggggtgggtgttgctgggggc
atggggtccaaaccccatcaaagttggagtggaggaaacaaaatgcaccagatgccaaac
agccagccgggctccatcacaggcccaccggcacaactgcaacaatcgcagccccgcaat
cagcatccacagcgacagcaagcattggaccaaggggctatgcaagggggcggggggagg
aaacccatctctcaagcccagaatcagaaccaaagctcaggctggacctcggggcccatc
cctggtggctccgtagggggtggaagcagttctgaacccagcggctgggaggaaccctca
ccgcagtctataagcaggaagaacgagatagatgatggaacatcagcatggggagaccca
acccattacaactacaagccggtcaacctgtgggataagaacagcgcccctgctgggcag
cagccgcatgaccagcctcagcctcagcctcagcctcaggctcaacaacagcaaccacag
gcacctccaatacagcagcagcctagcaggcaggccgcagggctaggaggtaacagagac
ttcaacactggccatggacctggaaaaacttcagctataggtccttcaggttggagtggc
acttctccaactagtccttcagtagacaatggcacggcagcttggggaaagactacggat
gcccctactggctggggagagcctgatgatgctggagggaagacaacgggctggggaaac
ccctctcccatccccaccaaatctggttcaaagtctatgcaagatggctggggggacaaa
gagggctctgtggctgcctcgcgacactcaagctgggaggaggaggaggagggaggcggc
ggtggcatgtggaacagcgccggctcccagggaagcggctcatcttggggacagggaagc
aatgggggctggggacagaaccacactgggaagaagcccagcaacaagggtccactgaaa
gctggtggaggagactcgtggatgagccccatcaacagacagttctccaacatggggctg
ctgaatgatgatcccagtggcccaaacattgacctggctccaggttctctacaggagaag
aagatggatgcggagaaaagaggcatgggaatgggaatgaacgattacaatggagacatg
aggaagggaggaaggggaggaggggggatggcttatcgtccacctggttccaaagaggca
gcacctggcgatgctgggtcctactatgacaagaccttgcctttgaccaatcaggattgg
tgccttggggaggagggtccttgctctctgtattcaccacccactgtctacaagccccat
tccctcttcaaccacactattccctttagacaaggcagtcacagtatctttggcagtagc
ggagggatggctcagtcaagacaccagccaagtgtcccacccatgaaccagtccccaggg
atacgagcgcaagtgcctcatcagttcctgtcacctcaggtgccaggctctgtgctgaag
cagatgccccctcccagcgggagcgtggggggtgttggcggcgtgggaggagtggcagga
gtcgggggaggtgtgttccctccacagctgtccccccagcatatcgccatgctcagcagc
atctacccacctcacatccagtttcagctggcttgtcagctcctcctccagcagcagcag
cagcagccgcaacagcagcaacagcagctactgcagaaccagaggaagttcacgccgaac
gtgcggcagcaggctgaccctcaacagctggccagaataatggcggtgctccagcagcag
aggcagcagcagcaggtcgggagtttaggcggcagctccaaactctccccctcccaccat
ggtggaggtggcggtcccaaactgcccggggctgataccctgcaccacccaggcctggca
ggatctgtggctgacctgcaccagaaaactctcgggccgtattccgcagggtttggttct
ggggtgaaccttccaggtctggacctgggtggctctgtagtgggggggcctgggggcatg
aaggacctagggattcagcagtcccgcttcaaatggatgatggaaggacactcttctcca
gacacctcctcacctgagaacgcattccacaaaaatggtcctgttccccccatgaagatg
ccagggggctcgccctactctcagtatgacatgatggttggagacgggctgggagacaac
tggcatcgcacccctggcaacaagatgggtaccaagcctacccccacgcccagctggccc
cctgagttccagcctggtgtgccctggaagggaatcgaccgtgtcgaccccgattctgac
ccttacatgaccccagggagcatgatgggaaacgcagtgtcccctaacctcaatgatact
gagcaccagttgttacaagacaatactgatcccacccctcccctcaacaccttgctgcct
tcacctggtgcctggccctacagtgcctcagacagtcccctcaaccacgcacacaactca
gcaaagtacatagactacaagaccagctggcccccagagcccatcggacacaagtcctgg
aaagctactcgcggcagcagccagaaccagctgtcccagctttcccgcccacctccagga
ctagccagtcaaaagcagccatcgccttctccttggtctggcggagctcctcgattggct
ggccggggctgggccagtggctcgagcaccactgcctcgacctggagtgacggcagctct
cgggaaagctgctggttggtgctcagcaacctcacaccacagattgatggctccactctg
aggaccatctgtatgcagcacggccctcttctgacctttcaccttggcctgacccagggc
accgctctgattcgctacagctccaaacaggaggcagccaaggcccagagcgcactccac
atgtgtgttctgggtaacaccaccatcttggcggagtttgtgagcgaggaggatgtggct
cgctacattgcacattcccaggcaggaggagcagggagtggaggaaccacggccggctct
gcaggctctgggcctacagcatcctccgcagtgggggccaacggtaacggagggagctgc
gagaggggaggagcaggaagcagcagtgggggaggagtagaaggaggctccacagctgga
ggagcaggaaatggaggagccgggccttccagctccgggtggcagagtctggacagcaca
ggcagctcatcggaccagtcctccacccaggggcccgggctgggcatcttcacccagtgg
agcagcaatgggaccggggtgggcggggctggaggtgcggaggccggaaggcagggtctg
tgggggggaatgggtgggatgagcggggcggggtaccctagcagtagcctctggggttcc
ccagcacttgaggaccgtcaccagatgggcagccccgcctcgctgctgccaggggacctg
ctgggcgggggggctgactccatctga
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