Sander lucioperca (pikeperch): 116048984
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Entry
116048984 CDS
T07345
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X2
KO
K04834
voltage-gated sodium channel type II alpha
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sluc04040
]
116048984 (scn1laa)
Ion channels [BR:
sluc04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
116048984 (scn1laa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
ATP-synt_B
PFF1_TM
Neur_chan_memb
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
116048984
NCBI-ProteinID:
XP_031154177
Ensembl:
ENSSLUG00000014159
LinkDB
All DBs
Position
8:complement(22429734..22457478)
Genome browser
AA seq
1992 aa
AA seq
DB search
MEQLLVPPGPDSFRPFSRESLKAIESRIAEENAKKPKGEKKKRNDENKIKPSCDLEAGKS
LPILYGDTPKGMVSTPLEDLDPYYFNQKTFIVLNKGKCIFRFNAAPALYLLSPFNLLRRI
SICILVHSLFSMLIMCTILANCAVMTLSGPPTWAKTVEYIFTAIYTLESLIKILARGFCI
GKFTFLRDPWNWLDFSVIVMAYVTEFANLGNFSALRTFRVLRAFKAISVIPGLKTIVGAL
FQSVKKLANVMILTVFCLSVFALIGLQLFMGHLKHKCVRDPIHANSTLNGTSHGNYTNST
DAWNAYIANETNHYYLPGKKDPLLCGNSSEAGRCPEGFLCFKVGKNPDYGYTSFDSFGWA
FLSLFRLMTQDYWENLYQQTLRASGKPYMIFFVLVIFLGSFYLINLILAVVAMAYEEQSQ
ATIKEAKEKEEQFQAMLEQLRRQQEDAQAAAAAEGGEASDKAVGPESSSDNSKLSSKSAK
ERRNRRRKMKEEGKGGEGKVPKSESQDSMKKARFRFSVDANQLNYDMKSSSAHQSFLSFR
GPLFSSRRNSRTSLFSFRGQAQEVGSENEFADDENSIFEDNLSRRGSLFLPRSCDRRSSS
MSQCSFLSHQLIPPSRIKHSSVDCNGVVSLVGGNSLPSSPVGLLLPKVTIDMASIGDNAD
TTDTEYRQAGGGTHQEFMDYLEGPEARQRAHSIASVITSTMEELEESRQKCPPFWYDFAH
TFLIWECCPAWLKIKKLVKLIVMDPFGDLTITICIVLNTLFMAMEHYPMSTGFTYMLYVG
NVVFTAIFTAEMVLKIIALDPYYYFQERWNIFDAIIVSLSLMELCLEKVGGMAVLRSFRL
LRVFKLAKSWPTLNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKYYKENVCRI
CKNCTPKRLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGMPMCIIVYMMVMVIGN
LVVLNLFLALLLSSFSADNLAATEDDSDMNNLQVAIGRIHKGIAFVKSLLRNSCNSVCLR
TKKKGKGEDKSLDELHKPFGPNGVPNHIIKDFPKNGNGDVTGVDKTGDKYIVSSKSDDSI
MSFINNPSLTLTVPIAVGESDFENLNTDDFSSASSDAAGCHVIVDDDDQSSSSEGSTIDG
VPGGEGRDSVDFELEESMEPDACFPDGCVQKFPCCQVNVEVGWWKVWWTLRKTCYHIVEH
NWFESFIIFMILLSSGALAFEDVYIEKRKTIKTMLEFADKIFTYIFILEMLLKWVAYGYA
KYFTNAWCWLDFLIVDVSLVTMVANAMGCSDLGPIKSLRTLRALRPLRALSRFEGMRVVV
NALLGAIPSIFNVLLVCLIFWLIFSIMGVNLLAGKYGHCVNRTSDEDFLPSEVKNKTECE
KFDEAARWKYHKINFDNVGLGYLALLQVATFKGWMPIMYAAVDSQSKQEHQPEYENNMFM
YIYFVVFIIFGAFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKP
QKPIPRPSNKIQGYIFDFTTKQAFDIVIMVLIWLNMVAMMVETEDQSKQKDNILYWINVV
FIIIFTGECLLKMIALRHYFFTNGWNVFDFIVVILSIIGVFLSKLIEEYFVSPTLFRVIR
LARIGRVLRLIKSAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMANFAYVKREE
GIDDLFNFETFGNSMICLFQITTSAGWDGLLAPILNKHEDDCNNSTEHPGSPGQGDCGSP
AVGIAFFVSYIIICFLIVVNMYIAVILENFGVATEESTDPLSEDDFETFYEVWERFDPHA
TQFMEYNKLSEFADALDPPLRIAMPNKLELISMDLPMVNGERIHCLDILFAFTKRVLGEG
GEMDILRGQMEERFMASNPSKVSHEPITTTLRRKQEDTSAIVIQRAFKKYVRKHAAVKAL
YSSSNNIKKDETHIDKEDLVTDKLQDISSADKSELIPSTAPQPSCNSVTTNGKNKYEKDK
SEKEVEGKDVKE
NT seq
5979 nt
NT seq
+upstream
nt +downstream
nt
atggaacagctgcttgtaccaccaggtccagacagcttccgtccctttagtcgtgagtct
ctcaaagccatcgagagccggattgctgaggagaacgcaaagaagcccaagggagagaag
aaaaaacgcaatgatgagaataagatcaagcccagctgtgacctggaggcgggcaaatca
ctccctattctgtatggggacactcctaaaggcatggtgtcgacaccgctggaggacctg
gatccctactactttaatcagaaaactttcatagtattaaacaaaggaaaatgcatcttc
cgcttcaacgccgctcctgccttgtacctcctgagccccttcaaccttcttagaagaata
tcaatttgcattttggtacactcattgttcagtatgctgattatgtgcactatcctcgcc
aactgtgcagttatgacactgagtggtccgcctacctgggcaaagactgtagagtacata
tttactgcaatctatacgcttgaatccctcattaaaattttagctcgagggttctgcata
gggaagttcacgtttcttagagatccctggaactggctggatttcagtgtcattgtcatg
gcgtatgtaacagagtttgcaaacctaggcaatttttcagctcttcgcacattcagagtg
ctgagagcttttaaagctatttcagttatcccaggcctgaagaccatcgttggtgcattg
ttccagtcagtgaagaagcttgccaatgtgatgattctcaccgtcttctgcctgagtgtc
ttcgccctaatagggttacaactgtttatgggccatttaaagcacaagtgtgtccgggac
ccaatacatgctaattccaccttgaatggtacatcacatgggaactacacaaatagcact
gacgcctggaatgcttacatcgctaatgagacaaatcattattaccttccaggaaaaaaa
gatccattgctttgtggcaatagcagtgaagctgggcggtgtccagagggttttttgtgc
ttcaaagtgggaaagaacccagactatggttacaccagttttgactcatttggttgggcc
ttcctctctctgtttagactgatgacacaggattactgggagaatctttaccagcagacg
ttgcgggcatctggaaagccctacatgattttttttgtgctggtgatattccttggttcc
ttctacctgatcaacctgatcttggctgtagtagctatggcctacgaggagcagagccag
gccaccataaaagaggcgaaggagaaggaggaacagtttcaggccatgcttgagcagctg
agacggcagcaagaggacgctcaggcagcagctgctgccgagggtggggaggccagcgat
aaagccgttggcccagagagctcctctgacaattccaagctcagctccaaaagtgctaaa
gagagacgcaacaggcgaagaaaaatgaaggaggagggcaaagggggtgaagggaaggtt
cctaaatccgagtcacaggacagtatgaagaaagctcgcttccgcttctctgtggatgca
aaccagctcaactatgacatgaaaagctcatccgcacatcagtcttttctgagttttcgt
gggcccctgttctcatccagacggaacagcaggaccagccttttcagtttccgaggccaa
gcgcaggaggtgggctcagaaaatgagtttgctgatgatgagaacagcatttttgaggac
aacctgagtcggaggggctctttgtttcttccccggagttgtgatcgacgcagcagcagt
atgagccagtgcagcttcttgtcgcatcaactaattccacccagtaggatcaagcacagc
tccgtagactgcaatggggttgtgtctctggtgggtgggaattcactcccatcgtcacct
gtggggcttcttctgcctaaagtgacgatagatatggcttccatcggagacaatgctgac
accactgacacagaatacagacaggccggcggaggaacacaccaggagtttatggactac
cttgagggcccagaggctagacagagagctcatagtatagcaagtgtcataaccagcaca
atggaggagcttgaagagtcgaggcagaagtgtcctcctttctggtacgattttgcccac
accttcctcatctgggaatgttgtccagcatggctgaagatcaagaagctggttaaatta
attgtgatggatccatttggggaccttaccatcaccatctgcattgtactcaacacattg
tttatggccatggagcattatccaatgagcacaggtttcacctatatgctgtatgtgggc
aatgtggtatttactgcaatcttcacggctgaaatggttctcaagatcattgctttggac
ccatactattacttccaggagagatggaatatttttgatgcaatcattgtcagtttaagc
ttgatggagctgtgtttggaaaaagtgggtggcatggctgttctgagatcattcagattg
ctgagagtattcaagttggctaaatcgtggcccactcttaacacactgatcaaaataatt
ggtaattcagtgggggctttgggcaacctgacgctggtgctggccattatcgtcttcatc
tttgctgtagtgggcatgcagctatttggaaaatactacaaggaaaatgtgtgtagaatc
tgcaaaaattgcactccgaaacgtctgccccgttggcacatgaatgacttcttccattca
ttcctcattgtgttccgagtgctttgtggagagtggatagagaccatgtgggactgtatg
gaggtggctgggatgcccatgtgcatcattgtctacatgatggtcatggttattggaaac
cttgtggtgctgaacctgttcctggccctgctgctcagttcatttagtgctgacaacctg
gcagcgacagaagatgacagcgacatgaacaatttgcaggttgccattggacggattcac
aaaggcattgcctttgtcaagtctctgcttcgaaacagctgcaacagtgtctgtctcagg
acaaagaagaaagggaaaggtgaggacaaatccctggatgagctacacaaacctttcggg
ccgaatggtgtccccaaccacatcatcaaagattttcctaagaatggaaatggggatgtg
accggagtggacaaaactggagacaagtacatagtcagcagcaagagtgatgattctata
atgtctttcatcaacaatcctagtctgactctcactgttcctattgctgtgggagagtct
gactttgaaaacctcaacacggacgacttcagcagtgcctcgtctgatgcagcaggatgc
catgtgattgtagatgacgatgaccagtccagctcctctgagggcagcacaatagacggt
gtgccaggcggggagggaagagactctgtagactttgaattggaagaatctatggaaccg
gacgcatgctttcctgatggctgtgtgcaaaagttcccatgttgtcaggtaaatgtcgaa
gtgggctggtggaaggtgtggtggacgcttagaaagacctgttaccacatcgtggagcac
aactggtttgagagctttatcatcttcatgatcctgcttagcagtggagcactggcattt
gaggatgtctacattgagaagaggaagaccattaaaacgatgttggagtttgcagataaa
atcttcacctacatcttcattctggagatgttactgaagtgggtggcgtatggatatgcc
aagtattttacaaatgcctggtgctggctggacttcctcattgttgatgtctcactggtc
acgatggtagccaacgccatgggatgttctgacctcggtcccatcaagtctctgagaacc
ctgcgagctctgaggccactgagggccctgtctcggtttgaaggcatgagggtggttgtg
aatgccctgcttggagccattccttccatcttcaatgtgctgctggtgtgcctcatcttc
tggctcatcttcagcatcatgggagtcaacttacttgcggggaagtacggccattgtgtc
aacagaacctcggatgaagatttccttccatcagaagtgaaaaacaagacagaatgtgag
aagtttgacgaggctgctcgctggaaataccacaaaatcaactttgacaatgttggcttg
ggttaccttgcactgctgcaagtggctacattcaagggctggatgcccatcatgtatgct
gctgtggactctcaaagcaagcaagaacatcaaccagaatatgaaaacaacatgttcatg
tacatatattttgttgttttcatcatatttggagccttctttacactcaatctcttcatt
ggtgtcatcatagacaatttcaatcagcaaaagaaaaagtttggaggtcaagacatcttc
atgacagaagaacagaagaaatactacaatgccatgaaaaagctggggtcaaagaaacct
caaaaacctattcctaggccatcaaacaaaattcaaggatacatctttgacttcaccaca
aaacaggcattcgatattgtaataatggttctaatatggcttaatatggtagccatgatg
gtggaaactgaagaccagtccaaacaaaaggacaatattctctactggattaatgtagta
ttcattatcatcttcactggagagtgtttgttgaagatgattgcgctccgccattacttt
ttcacaaatggttggaatgtgtttgacttcattgttgtcatcctgtcaatcattggtgtg
tttctctcaaaactgatagaggagtattttgtttcgccaaccttgttcagagtcatccga
ttggctcggattggtcgcgtcctccgccttattaaaagcgccaaaggaatccgcacactc
ctgtttgccttgatgatgtcacttcctgccttgttcaacattggtcttttgctcttcctg
gtgatgtttatctatgccatctttggcatggcaaactttgcttacgtcaagagggaagaa
ggcattgatgatcttttcaattttgagacatttggcaacagcatgatctgtttgttccag
atcaccacctcagcagggtgggatggcctacttgctcccattctcaacaaacatgaagat
gattgtaacaattccacggagcatcctggcagtcctggtcagggagactgtggatctcct
gctgtggggattgccttctttgtgagctacatcatcatctgtttcctgattgtggtgaat
atgtacattgcagttatcctagaaaactttggtgtggccactgaggagagcacagaccca
ctaagtgaggatgattttgaaacattttatgaggtctgggaaaggtttgatcctcatgca
acacagttcatggagtacaataagctgtcagaatttgcagatgctctggacccaccatta
cgcatagccatgcctaacaagctggaactgatctctatggatttacccatggtgaacggc
gagcggattcactgcctggacatcctgtttgcattcacaaaacgtgttctgggcgagggt
ggggagatggacatcctaagggggcagatggaggagcgcttcatggcctccaatccttcc
aaagtgtcccatgaacccatcactaccaccctccgccgcaaacaggaggacacgtcagcc
attgtcatccagagagcattcaaaaagtatgtaagaaagcatgctgccgtaaaggcctta
tactcatccagtaacaatattaaaaaagatgaaacacacattgacaaagaggatcttgtc
acagacaaactccaagacatttctagtgccgataaaagtgaactgattccttcaacggcc
cctcaaccttcatgtaacagtgtgacaacaaatggaaaaaacaaatatgaaaaagacaaa
agtgaaaaggaggttgagggcaaagatgtcaaagagtaa
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integrated database retrieval system
