Sander lucioperca (pikeperch): 116048991
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Entry
116048991 CDS
T07345
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116048991 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116048991 (sf3b1)
03036 Chromosome and associated proteins [BR:
sluc03036
]
116048991 (sf3b1)
Spliceosome [BR:
sluc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116048991 (sf3b1)
Complex B
116048991 (sf3b1)
Complex C
U2 SnRNP specific factors
116048991 (sf3b1)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
116048991 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
Menin
UNC45-central
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
116048991
NCBI-ProteinID:
XP_031154218
Ensembl:
ENSSLUG00000017620
LinkDB
All DBs
Position
8:complement(32784109..32807075)
Genome browser
AA seq
1324 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLLEEGDQGVGLDSTGFYDQEIYGGSDSRFAGYVTSI
AANEQEEDDEEDSTTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPPKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQLAEKAKSG
DLKAVNGSAASQAAAAAAAKRKRRWDQTADQTPTTGNTTPKKISTWDQADSSSETPGHTP
GHTPAHTPSSTRWDETPGRPKGSDTPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPG
HGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDE
TPASQMGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLT
DDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQP
SGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQIT
DKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEP
LLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALG
IPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQK
VRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAE
YANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQ
HRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLG
AADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRL
NNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAI
VNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICF
ELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA
ETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDR
DLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVA
IGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNMYVRYEL
DYVL
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagacatcgaggcccagatcctggagatccagggg
atgaaggctaccctgctggaggagggagatcagggggtgggcctggactccactggcttt
tatgaccaggagatctacggaggcagcgacagccgttttgccggttatgtcacttcaatc
gctgccaatgaacaggaggaagatgatgaagaggattcaacaacaagcttgttgggacag
aagaagccagggtaccatgcaccagtggcgatactcaatgccattcctcagtcagacgag
caatacgacccatttgcagagcatcgtccaccaaagatcgcggagcgggaagatgaatac
aaagcccggcgcagacagatgatcatctcacctgagcgtctcgacccttttgcagatggg
ggcaaaacgccggaccccaagctgcaagtcaggtcgtacgtggacgtcatgttggagcag
aacctgtcaaaagaggagagagagattcgtcagcagctggcagagaaggccaaatctggg
gacctgaaagctgtcaacgggtctgctgcctcacaagctgctgccgccgccgccgcaaag
cgtaagcgccgctgggaccagacagctgaccaaaccccaactaccggtaatactacaccc
aaaaagatttccacctgggaccaggccgactcctcttctgagactccaggacacacccca
ggacacacccccgcacacacgccttcaagcacccgatgggatgaaacgcccggccgccct
aaaggcagcgacaccccgggagccactcccagtacccgcatgtgggaccccactcccagt
cacacgcctgctggcgccgccacccctggcagggacacgccgggccatgccacgcctggt
cacggtggagccacgggaagcgtacgcaagaaccgctgggacgaaaccccgaagacagaa
agggagaccccgggacacgggagtggctgggctgaaacgcctcgcaccgacagaggagat
gagtccgtgggcgagactccgaccccaggggccagtaagaggaagtctcggtgggatgaa
acccccgccagtcagatgggatcctcaacaccactacttaccccaggaaaaacgcccata
ggcacgccagctatgaacatggctaccccaacaccaggtcacctgatgagcatgactcca
gagcagctgcaggcgtggaggtgggagagggagattgatgagaggaaccggcctctcaca
gacgacgagcttgatgccatgttcccagagggatacaaggtcttgcctccaccagcaggc
tacgtgccgatccgaactccggcccgtaagctgtcggccacgcccacgcccattggaggc
atgacgggcttccacatgcaagtggaggaccgcaccacaaaacagatgaatgaccagcct
tccggaaacctccccttcctcaaaccggatgacatccagtattttgacaaactgctggtt
gaggtggacgaatccacgctgagccctgaggagcagaaagagaggaagatcatgaagttg
ctgctgaaaattaaaaatggaacaccgcccatgagaaaggccgctctgcgtcagatcaca
gataaagctcgtgaatttggagcaggccccctgttcaatcagatcctgccattactcatg
tcgcccaccctggaggaccaggagcgccatctgctggttaaagtcattgaccgcattctc
tacaaactggatgacctggttcgaccctacgtacacaagatcctggtggtgattgagccc
ctgctgattgatgaggactactatgccagagtagaaggccgagaaatcatctccaacttg
gcaaaggcggccggtctggccacgatgatctccacaatgcgacccgatatcgacaacatg
gacgagtacgtcagaaacaccacagcccgagccttcgccgtggtggcctcagctcttggt
attccctctctcctgccgtttctcaaagctgtgtgtaaaagcaagaagtcctggcaggcc
aggcacacgggcatcaagatcgtgcagcagatcgccatcctcatgggctgcgccattctg
ccccacctgcgcagcttggtggagatcatcgaacacggtctggtggacgagcagcagaag
gtgaggaccatcagtgccctggctatagctgccctcgctgaagctgctacgccctacggt
atcgaatcctttgactcggtcctcaagccgctctggaagggtatcagacagcacagagga
aagggtctggctgctttcctgaaagctatcggttacctgatcccactgatggacgccgag
tatgcaaactactacaccagagaggtgatgctgatcctcatcagagagttccagtccccc
gacgaggagatgaagaagattgtactcaaggtggtgaagcagtgttgtggcactgacggt
gtagaagccaactacattaagacggagatcctgccccccttcttcaagcacttctggcag
cacaggatggctctggacagacgcaactacagacagttggtggacaccacagtggagctg
gccaacaaagtgggagcagcagagatcatttctcgcatcgttgatgacctgaaagacgag
gcagagcagtacagaaagatggtgatggagaccatcgagaagatcatgggcaacctgggt
gcagctgacatcgaccacaagctggaggagcagttgatcgacggtatcctgtatgccttc
caggaacagacaacggaggactccgtgatgctgaatggtttcggcacagtggtgaacgcc
ctcgggaagcgcgtgaaaccctacctgcctcagatctgtggtacggtgctgtggcgtctc
aacaacaagtccgccaaagtccgtcagcaggctgccgacctgatctcccgtacagccgtg
gtcatgaagacttgccaggaggaaaagctgatgggtcacttgggtgtggtgctgtacgag
tacctgggagaggagtacccggaggtgttgggtagcatcctgggagcattgaaggccatc
gtcaacgtcatcggtatgcacaagatgactccgccaatcaaagacctgcttcctcgtttg
actcccatcctgaagaacagacacgagaaagtgcaggagaactgtatcgacctggtgggc
aggatcgctgacaggggtgctgaatatgtgtcggccagggagtggatgaggatttgtttc
gaactgctggagctgctgaaggctcacaaaaaggccatccgcagagctactgtcaacacg
tttggctacatcgccaaagccatcggcccccacgatgtcttggccacgctgctcaataac
ctgaaggtccaggagcgtcagaacagagtctgcacgactgtggccatcgccatcgtcgcc
gagacctgttcaccgttcactgtgctgccggcgctcatgaacgaataccgcgtgcctgag
ctcaatgtgcagaacggcgtgctcaagtccctctccttcctgttcgagtacatcggagag
atgggcaaggactacatctacgccgtcacgccgctgctggaggacgcgctcatggacaga
gacctggtccaccgacagacggccagcgctgtagtccagcacatgtctctgggcgtctac
ggtttcggctgtgaagactccctcaaccacttgctgaactacgtgtggcccaacgtgttt
gagacgtcacctcacgtgatccaggcggttatgggcgccctggaggggctgagggtcgcc
atcgggccctgccgcatgctgcagtactgcttacagggcttgttccatccggccaggaag
gtgcgagacgtctactggaagatttacaactccatctacattggctcacaggacgccctc
atcgctcactacccacaagtctacaacgacgagaaaaacatgtacgtccgctacgaacta
gattacgtcttgtaa
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integrated database retrieval system
