Sander lucioperca (pikeperch): 116049086
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Entry
116049086 CDS
T07345
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sluc03000
]
116049086 (prdm1a)
Transcription factors [BR:
sluc03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
116049086 (prdm1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
zf-C2H2_6
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_jaz
zf-met
B129_C2H2-zf
zf-C2HE
STL11_N
GAGA
Zn_ribbon_8
Motif
Other DBs
NCBI-GeneID:
116049086
NCBI-ProteinID:
XP_031154324
Ensembl:
ENSSLUG00000007567
LinkDB
All DBs
Position
10:complement(10068465..10083937)
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AA seq
849 aa
AA seq
DB search
MCGWDQSYTATSHSSAMLTSEGAHTMEQDDTHHGAKMASTATTSSSSDGAQTLADSDVDM
EMEMEDADMTQWTEPEFEEKCTYIVKDTPWEAGQGGDAMTTTTSTRAEASLPRNLVFKHP
ADSKEVVGVCSREYIPKGTRFGPLVGEIYTADSVPKDANRKYFWRIYEDREFHHFVDGLD
ETRSNWMRYVNPAHSATEQNIAACQNGMEIYFYTVKPIPAGAELLVWYCHDFARRLHYPP
SGELMMQKLKQSLLEVKQQQVSSEERLVEACSPSPIAVTPTPPKREHSVLSILRGTNSTS
SSSSIKREPSRPLPTRPRCADSPERLLYPRALYPALRPHPHIPEDFLGHKSGQLGYPATR
SPGNQSSATPSPSARSSPDSSPQGSPLGPAPSSASFYPAGLGSYPGYSPPSTPLSSSFYP
PAPYSRYILPHHYPLPGGGVPTVGGIFPRMYPLYSSLLPPHVPLLPSDTAGRRFLMPDHV
HPSPISAHRDFLLPRPTSAFSAATSLKDKAGPHHPYPAGHPHPHRPTHVPSSGSPTAGTA
PLSERVPTKPTSALLGNASEHCSDEEAINLTKVKRGPGSAGYKALPYPLKKQNGKIKYEC
NVCSKTFGQLSNLKVHLRVHSGERPFKCQTCNKGFTQLAHLQKHFLVHTGEKPHECPVCH
KRFSSTSNLKTHLRLHSGEKPYQCKLCPAKFTQFVHLKLHKRLHSRERPHKCSHCHRHYI
HVCSLRLHLKGYCPAVSSQAALEEVQRANEEIERFDVSEHAEQLEQLQGGAEVEAMLEKQ
VLGMLWRETDLKSSHFHPHHKGCTTELMSAGYGAYESPNETSVIKMRHSSHIPQLPANVT
VKQESEDHA
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggatgggaccaaagttatacggcgacctctcatagctcggccatgttgaccagt
gagggggcgcacaccatggagcaggacgacacgcaccacggagccaagatggcttccacc
gccaccaccagctccagctccgacggagcacagacgctggcagactcggacgtggacatg
gagatggagatggaggacgcggacatgacccaatggacggagccagagttcgaggagaag
tgcacgtacatcgtcaaagacacgccgtgggaggcggggcaaggcggggacgccatgacg
acgacgacgtcaaccagagctgaggcgtcactgccccgaaacctggtcttcaaacacccg
gctgacagcaaggaggtggtcggcgtgtgcagcagggagtacatccccaaaggaacccgc
ttcggtcccctggtgggcgagatctacacagccgacagcgtccccaaagacgccaatcgc
aagtacttctggaggatctacgaggacagggagttccaccacttcgtcgacggcctggat
gagactcgctctaactggatgcgctacgtgaacccggcccactcagccacggagcagaac
atagcggcatgtcagaacggcatggagatttacttctacacggtcaagcccatcccggcc
ggtgctgagctgctcgtgtggtactgccacgactttgcccgacgtctccactacccgcca
tccggagagctgatgatgcagaaactcaagcagtctctcttggaggtcaagcagcagcag
gtgagcagtgaggagcgtttggttgaagcctgcagcccatcccccatcgcagtcacccct
acgccgcccaagagggaacacagtgtcctctccattctgcgtggcaccaacagcacctcc
tcctcctcgtccataaagagggagcccagtcggccgcttcccactcgcccgcgctgcgcc
gacagccctgagcgcctcctataccctcgcgcactctacccagctctcaggccccaccct
cacatccctgaagacttccttggccacaaatctggccagcttggttacccagcgacacgt
tctcctggcaaccagtcttcagccacgcccagcccgtcggcaaggagcagccccgacagc
agccctcaggggagccccttgggtccggcaccatcgtcagcttctttctaccccgccggg
ctgggttcttaccctggttactccccgccatctacccccctctcctcatccttctaccct
ccagccccctactcacgctacatccttccccatcactaccctctgcctggaggtggcgtc
cccaccgtaggaggaatctttccaaggatgtaccctctctacagcagcctcctgccccct
cacgtgcccctcctgccttccgacacagcagggaggcgcttcctgatgcctgaccacgtc
cacccctcccccatctctgcccacagagacttcctccttcccaggcccaccagtgccttc
tcagccgccacctctctgaaggacaaagcagggcctcaccacccttacccagcagggcac
cctcacccacacagacccacccacgtcccctccagcggctccccaacagcaggcacagca
cctctcagcgagcgggtgcccaccaagcctacctcagccctgctgggcaatgccagcgag
cattgctctgatgaggaggccatcaacctgaccaaggtgaagcgtggcccgggctcagcg
ggctacaaggcgctgccgtacccgctgaagaagcagaacggcaaaatcaagtacgagtgc
aacgtgtgcagcaagaccttcggacagctgtcaaacctgaaggttcatcttcgtgttcac
agtggagagagacccttcaaatgtcagacctgtaacaaaggcttcacccagctggctcac
ctgcaaaaacacttcctggtccacactggggagaagccacatgaatgtccggtttgtcac
aagcgcttcagcagcaccagcaacctgaaaactcacctgcgcctccactcgggggaaaag
ccctaccaatgcaaactctgcccggccaagttcacgcagtttgtccacctcaagctgcac
aagcgcctgcactcccgcgagcgtccgcacaaatgctcccactgccaccgccactacatc
cacgtgtgcagcctgcggcttcacctgaagggctactgcccggccgtctccagccaggct
gccttggaggaggtgcaacgcgccaacgaggagatcgagcgatttgacgtcagcgagcat
gccgagcagctggagcagctgcagggaggcgcagaggtggaggcaatgttggagaagcag
gtcttggggatgctgtggagggagaccgaccttaagtcttcccacttccatccccaccac
aagggttgcaccaccgagcttatgtctgcgggttacggtgcatacgagtccccgaatgag
acgtcggtcatcaagatgcggcacagcagccacatcccgcagcttcctgccaacgtcacc
gtcaagcaggagtcagaggatcacgcttaa
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