Sander lucioperca (pikeperch): 116049218
Help
Entry
116049218 CDS
T07345
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sluc03016
]
116049218 (cdkal1)
Enzymes [BR:
sluc01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
116049218 (cdkal1)
Transfer RNA biogenesis [BR:
sluc03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
116049218 (cdkal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TraT
TRAM
Motif
Other DBs
NCBI-GeneID:
116049218
NCBI-ProteinID:
XP_031154527
Ensembl:
ENSSLUG00000005489
LinkDB
All DBs
Position
10:31397076..31689111
Genome browser
AA seq
563 aa
AA seq
DB search
MPSACDSLIEDIEDMVSSTDPTPNERQSARKSIVPRSRKKNESLINEELQADSLIPGTQK
IWMKTWGCSHNNSDGEYMAGQLAASGYKMTDDPTDADLWVLNSCTVKNPAEDHFRNSIKK
ALEQQKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDG
GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS
FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPEGAMLRLGMTNPPYILEHLEEM
AKILNHPRVYAFLHVPVQSASDSVLMDMKREYCIDDFKKVVDFLKERVPGVTIATDLICG
FPGETEEDFQETINMVKLYRFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKELSQLFH
SYNPYDHKVGERQHVLVTEESFDAQYYVSHNKFYEQVLVPKRAEFKGKMIEVDIYEAGKH
FLKGRPVEESKPFTPSIAAPLRKGEVSGLMQHQTPNGIQGPSMPSSSVLFIGSYSLDREV
LKKLGIGLTLAAAILAFIVEKLY
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctgcctgtgactctctgattgaagacattgaggacatggtgtcctctactgac
cccactcctaatgagagacagtctgctagaaagagtatcgtaccaaggtccaggaagaaa
aacgagagtctgatcaatgaggagctccaagctgacagtttgatccctggcacccaaaaa
atctggatgaaaacgtggggctgcagtcataacaattcagatggagagtacatggccgga
cagctagctgccagcggatacaagatgactgatgacccaacagacgcagacctgtgggtg
ctcaacagctgtactgtgaaaaaccctgcagaggaccacttcagaaactcaatcaaaaaa
gccctggaacaacagaagaaggtggtagtagcaggttgtgtcccccaggctcagccacgg
atggactacctcaaaggactcagcatcattggggtccaacagattgatcgagtggtggaa
gtagtggacgaggctgttaaaggccactcagttcgtctattgggtcagaagaaagatgga
ggccggaggctcggaggagctagactggacctgcccaagatcaggaagaaccctcttatt
gaaatcatctctattaacactgggtgtctgaatgcatgtacctactgtaaaactaagcat
gccagaggagacctggccagctatcccatcgaggagcttgttgagcgagccaggcaatcg
ttccaggagggagtgtgtgagatctggttgaccagtgaagacacaggagcctatggtaga
gacatagggacagacctgcccacattgctgtggagattggtggaggagattcctgaagga
gccatgctgaggctgggtatgaccaacccaccatatatcctggaacacctagaggagatg
gctaagatattgaatcatccacgcgtctatgccttccttcatgttcctgtgcagtcggcc
tctgacagcgtcctgatggacatgaagagagagtattgcatcgatgacttcaaaaaagtg
gtggacttcctcaaagagagggttccaggtgtaaccattgctacagatttaatctgcggt
tttcctggtgagacggaggaagacttccaagaaacaataaacatggtgaaactctaccga
ttccccagtctcttcatcaaccagttctaccccagacccggtacacctgctgccaagatg
gagcaagtaccagcacatgtgaagaagcagaggactaaagagctgtcacaactcttccac
tcttacaatccctacgaccataaggtaggagagaggcaacatgtgttggtgacagaggag
tcatttgatgcccaatactatgtgtctcacaacaagttctatgaacaggtgctggtacct
aaaagggctgagttcaaagggaagatgattgaggtggatatctacgaggcaggaaaacac
ttcctgaaaggccggccagtggaagagagtaagcccttcactccctccattgccgcacca
cttcggaaaggagaggtgtctggcctgatgcagcatcagacgcccaatggcatccaaggt
ccttctatgccttcttcatctgttttgttcatcggctcttacagtcttgacagggaagta
ctgaagaagctggggatcgggctgactctggcagcagccatcttggccttcatcgtagag
aaactgtactga
DBGET
integrated database retrieval system
