Sander lucioperca (pikeperch): 116049449
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Entry
116049449 CDS
T07345
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116049449 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116049449 (prpf40a)
Spliceosome [BR:
sluc03041
]
Complex A
U1 snRNP components
U1 related factors
116049449 (prpf40a)
Complex B
116049449 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
116049449
NCBI-ProteinID:
XP_031154969
Ensembl:
ENSSLUG00000021650
LinkDB
All DBs
Position
8:23499454..23516422
Genome browser
AA seq
879 aa
AA seq
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MSSSDANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHFPPIGMPPMGQRPPSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRMPAAAVQPTGPPGVDSTAAAPGTAGTT
NGSPQEEQPKKKSLWTEHKSLDGKTYFYNTETKQSTWEKPDDLKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTVEAMAPGITAAPAVQADNTATM
ATMIEAETATAVSEEHLSQAAMHHTAEVKTADAPVASSESSVATEATASIEVTKEERPEI
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFNELEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPETTWEGIRERFLKESAFEDVTLESERKRIFKDFMHVLEHE
CQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDEEYHKKKKRSQSKSPSERSSSGESERS
YKKSKKHKKKGKKRRHKSASPDSDTEKKGRERDGKREKDLEKDKENDKSRGKSRSDSKQK
SPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggacgctaataatggcccgagccaagcgcccccttatccaggtgtaccg
ccctcagggatacctcccccatttatgggaccaccaggaataccgcctcatttccctcct
atcggaatgccccctatgggacagcgaccgcccagcatgactccaatgcctcctggtata
attccccctggtataatgccaccaatgggggcaccaccaatgggacagatgccaggcatg
atgccacctatgatgccagggatgatgatgccccctcgcatgccagctgcggctgtacaa
ccaacgggaccgcctggcgttgactcgacagctgctgcacctggtactgctggtaccaca
aatggatctccacaggaggaacagccaaagaagaagtccctgtggacagaacacaaatca
ctggatgggaagacctatttttacaatacagagaccaagcaatccacatgggagaaacca
gatgatctcaaatctcctgcagagcaaatgctgtctaaatgcccttggaaggagtacaag
tcagacacagggaagccttattattacaactctcaaacgaaggagtccagatggaccaaa
cccaaagagctagaggatctggaagctatgatcaaagcagaggagaatggaacggtagag
gcaatggctcctggcatcacagcagctcctgcagtgcaagcagataatacagccactatg
gcaaccatgattgaggcggaaactgcaacagcagtctcagaggaacacctctctcaggcg
gccatgcatcacacagctgaggttaagactgcagatgcacctgtggcttcctcagagagc
tcagtcgccacagaggccacagccagtattgaagttacaaaagaagaacggccagaaatt
cagaagaaaacttacaaatggaacacgaaagaggaggccaagcaggctttcaaagagctg
ctgaaggagaagggtgtgtcatcaaactcctcttgggaacaggctatgaaaatgattatc
aatgatcctcgctacagcgcacttcccaaactgagtgagaagaaacaggcgttcaatgcc
tacaaagtccaaaccgagaaggaagaaaaagaagaggccagaattaaatacaaggagtcc
aaagaaacctttcagaggttcttggagaaccacgagaagatgacatctaccaccagatac
aagaaagcagaacagatgtttaatgagcttgaggtgtggagctgtgtaccagagagagac
cggctggagatctatgaagatgtattgttctaccttgctaagaaagagaaggagcaagcc
aagcagctaagaaagaggaactgggaagctctgaagaacattttggacaacatggccaac
gtcacataccgcaccacctggtcagaggcccagcagtacctgctggacaaccctaccttt
gcagaggatgaggagctgcagaatatggacaaagaggatgccctcatttgttttgaggag
catatccgggctctggagaaggaggaagaggaggagaaacagaagactcttctcagggag
agaagacgacaacgcaagaacagagaggccttccagaaattcctggatgagctccacgat
cacggtcagcttcactccatgtctgcctggatggagatgtacccgaccctgagctccgac
atccgctttgccaacatgctgggccagccgggttccactcccctagatctgttcaaattc
tatgttgaagacttgaaggcccgctaccatgatgaaaagaggatcattaaagatattctt
aaggacaaaggctttctggtggaagtcaacactagctttgatgactttggatcagtgatc
agctcagacaagagagccaccacactggatgcaggaaacataaagctggcattcaacagt
ttactggagaaggcagaagcccgagagagagagcgagagaaggaggaggccaggaagatg
aaaaggaaagaagcagcctttaaaaacatgctgaagcaggccacaccacccctggagcca
gagactacatgggaggggatcagagagagattcttaaaagaatctgcctttgaagacgtg
actctggagtcagagaggaaacggatattcaaagacttcatgcatgtcttagagcatgag
tgccaacatcaccactccaagactaagaagcactcaaagaagtctaagaagcaccacagg
aaacgatcccgctctcgatcgggctcagagtctgaggacgaggaataccacaagaagaaa
aagaggtcacagtccaaatctccttccgaacgctcgtcaagtggagaatctgagagaagc
tataaaaaatccaagaagcacaagaagaagggcaagaagagacgccataagtctgcatcg
ccagactccgacactgagaagaaaggaagagagcgtgatggaaagcgtgaaaaggactta
gagaaagataaagagaacgacaagtctcgggggaaatctcgctcagactccaaacagaag
tctcctaaaagaaaagcggcgaaagaggagggcggctgggatacatcaggcagtgagctg
agtgagggagagctggagaaaaggagaagaactttactggaacagctggatgcaccttga
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