Sander lucioperca (pikeperch): 116049613
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Entry
116049613 CDS
T07345
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116049613 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116049613 (cnot3a)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116049613 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116049613 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
116049613
NCBI-ProteinID:
XP_031155289
Ensembl:
ENSSLUG00000016333
LinkDB
All DBs
Position
10:complement(25116634..25130132)
Genome browser
AA seq
909 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIDELKRLIERHRFHI
RMLETILRMLDNDSIPVDSIQKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPAALVA
TSPSGQGNVEDEMYLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQSP
VKNGTPSLLSSFSSSTTSGSSSSSSLVSMASVVGGSPAVPSSNSLIGSFSSAVQQHQHQP
AQQQQQPQPPNQPQQQQPPQIKPSVPSNNTPSPPSNPLLPASPAPSLSTPSTPSSLALNS
QSQLTSVPTPASGLGLGLGLGLSKIGMTGTSSANQMSGLGLCGHPSSLNTMAGLISGSTP
APYAQAAASGGLGLSSTTQSSISENSTSIPTSGSSGVTTNGAGIGLGLLGSSPAHSSLSG
SILGLVPGQNVTPGASQVSPSSVSTTPGVVGMMGSSGGNISVIGGAGVNVAPARPPSGLK
QNGSTSYSAVVAESSTESALSTPSQSQSSQPSSLSSSTSQPMDNGPSLISSITLPPSSPS
PSFSDSTPGGGSLLNGPHSYTQASEALKAPEPLSSLKAMAERAALGSGLDGEIPNLHLTD
RGRNDIFSGSSAAPGTPAAPQPSVSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQESAWTH
MPHPSDSERIRQYLMRNPCPTLPFHHQIPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQ
YLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEY
RYLEDRDLQ
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaactacaaggtgagatcgatagatgtttgaaaaaagtagctgaa
ggtgtagaacagtttgaagacatctggcaaaagcttcataatgcagccaatgcaaaccag
aaggaaaaatatgaggctgacctcaagaaagagattaaaaaactacagcgattgagagat
caaataaaaacatgggtggcctcaaacgagatcaaagacaaaaggcagctagtcgagaat
cgcaaacttatagagacgcaaatggagcggttcaaggtggtggaacgtgaaacaaaaaca
aaagcctactctaaagaaggcttggggctcgcacagaaagtggatccagctcagagggaa
aaagaggaaacgggacagtggctaacaaatacgatagacactctaaatatgcaggtggat
cagtttgaaagtgaggtggaatctctttcggttcagacgagaaagaagaagggcgataag
gataagcaagatcgtattgatgagctcaagcggttgattgagaggcatcgattccacatt
cgcatgttggagaccattttacgaatgctagataatgactcaataccagtggattcaatc
cagaagatcaaggatgatgttgaatactacattgattcctcccaagacccagactttgaa
gagaacgagttcttgtatgacgacttagacctggaagacatccctgcagcattagttgca
acttctccatcaggtcagggcaatgtggaggatgagatgtatctccactccagcagcact
cccacttccacaacctcttcttcacccattcctccatccccggccacttgcactgctgag
aactcagaggacgataagaaaaggggacgatcgacagacagtgaagttagtcagtcacct
gtgaagaacggcaccccatccttgctatcttccttctcctcctccaccacctctgggtcc
tcctcgtcctcctcacttgtgtccatggcgagtgttgtcggaggcagtcccgcggttccc
tcaagcaacagtcttatagggagcttcagcagtgcggtgcagcaacatcagcatcaacct
gcacaacagcagcaacaacctcagccaccaaaccaaccacagcagcagcagccacctcag
ataaaaccctctgtcccctcaaacaacacccccagcccgccaagcaaccctcttctccca
gcctcacctgccccctctctctccacgcccagcacacccagttcattagctctcaactct
cagtcacagctcacatctgtgcccaccccggcatccggtttgggactcgggctggggctg
ggattgagcaaaattggcatgacagggaccagcagtgccaaccaaatgtctggtctgggc
ctgtgtggccacccctcttctttaaacacaatggcagggctcatttcgggctccacacct
gccccttacgctcaggcagcagcttcaggaggcttgggtttgagcagcaccacccagtcc
agcatttcagagaacagcacttccatccccacctctggctccagtggagtcaccaccaac
ggagcggggatagggctcggtttgctaggttccagcccggcccacagctctttgagtggg
agtattttgggtctggttcctgggcaaaatgtaacccccggtgcctctcaggtgtcccca
agttctgtcagcactacccccggagtagttggcatgatgggaagcagcggagggaatatc
agcgtgattggaggagcaggggttaatgttgctcctgctagaccacccagtggactgaag
caaaatggaagcacaagttacagtgctgtagtggcagagagctccacagaatcagctcta
agcacaccgagccagtcacaaagcagccaaccctcatctctcagttcttcaaccagtcag
ccgatggacaatggtcccagtttaatcagctccatcaccctgcctcccagctctccgtcc
ccatcgttctcagacagcacacccggaggagggagtcttctcaacgggccccactcctac
acacaggcatctgaggccctcaaggcccctgagcctctcagttctctgaaggcgatggct
gaaagagcagcgctgggatcaggcctggacggagagattcccaacctgcacctaacagac
agaggtcggaacgatatcttctctggttcatctgcagcgcccggcactccagccgccccc
cagccgtccgtgtcggaagtcagcattcccccttcgctcggggtctgtccacttggcccc
acccctctccccaaagaccagctctaccagcaggccatgcaggaatccgcatggacacac
atgccacacccctccgactctgagaggatcaggcaatacctgatgaggaatccatgtccc
acattgccgttccatcatcagataccgccgcaccactctgactccatagagttttaccag
agactgtccacagaaactctctttttcatcttctactacctagagggcaccaaggctcag
tatctgtctgccaaggctctgaagaaacaatcttggaggtttcacaccaagtacatgatg
tggttccagagacatgaggagcccaagactatcactgatgagtttgaacagggcacttac
atttactttgactatgagaaatggggccagaggaagaaggaggggttcacctttgagtac
aggtaccttgaagaccgagatctgcagtga
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