Sander lucioperca (pikeperch): 116049814
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Entry
116049814 CDS
T07345
Symbol
focad
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116049814 (focad)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116049814 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
MOSC
Motif
Other DBs
NCBI-GeneID:
116049814
NCBI-ProteinID:
XP_031155639
Ensembl:
ENSSLUG00000005478
LinkDB
All DBs
Position
17:1094693..1186157
Genome browser
AA seq
1801 aa
AA seq
DB search
MTESLKIGFDFPSPVIQAQTVRHLVAAVLKEKGPNGQITQSSTQGLALEALWQQCCSDCT
LVRSAVCDAIVLLVEQGHADLHYVLNSVLNLLPSARNVQGLIKVIGRLLQMQADQRDRET
AFTCPYSIRSSPHPYITALEHRADCWPTLLLEIDDFIQQAADRNEAVYISMLAPFLCYLY
CEPQRQTQHALLRHSLLRVLLPPQPGAGTVLQSSTVSDSLLLCLCQLVPHMQVDSVEAVL
ELCGFLGALLQGLAPATEQRWRSQRVGLLLQLLCACQRCLKLNGDCRPLLNVLQQLLPAC
QQELPLDELLMGVAMLLLEVPASQQTSLLHLALTLVCEQAELAPWLSPILVLPVLQLLSC
AALSEPLADRRTHSLNQDLAHRLLRSISSRGTEKPRQSSPPLALPLTSWYSELSVTLSTL
RRVADDPAATADWLLSLNSALLSNQSQLCSLSLMVSHLIITAQEDVCQLALKASQAIAAA
EPCQVPSLLPVLLFKLGKENNPALAHAVLNCLPNLGTHKLCVPMVLQTLHMLASAPKLRA
VALRLMTALWKKQDRVYPELQRLLGQQDSRVVVGRDFQWEQILARAACLRDVCRERPYQH
GGDMLAAIILTLNQCTRPDMATPAALALQGLQELCRAEVVDIVSTWRSLGPELSCDSRPL
MVRVIAELLALVPQLTAKSEEYEKLTQEVVSFLWNYAVSKDVEVASCGYRALADFPEAVH
TINLLPEAARPAAKPPGNDQDEQGKEEEEEAKDLSIPASSYVKLMALTPVSVLPAFELFL
TSLVKQEMSQMPRGVYFSALRGGNLRSDQGKTMAGIPSFMLKTYEKNKQPGLKPGLAAGL
LLCYELPVQTDRDGRPIDRFLLSRSRSYQQTLAALIHEVNIQPSEWHRALLLPQAWRGFM
SRAFHAVLQGRRADLEMQQKQGKEEAQELQYKQHCAWLWARDQLTDIIKAAAKDSPVVQG
NSILALSSLAAVLAKYESNLPADSDGSLRAGPEFVPTASWLAMVLHTLLSISSSSCKARG
QVFPWFLHRSYSGENTASAIARSCASLALSLLVPVLVVWQRDGLAQVLSALQASLPGSPT
ADDSQAVQFHSGLALGMVLSSLQQQRLSDVSVDADLLSSSLDALESCSFNPDLEYNTGCM
LGLALVLAALCSSGQTDQHVRITQTLDKLLSNLQDSSGQGRMLQEVLAYSVACVGVSAFG
GGLIDAAKAEEVMSTLRTLTEESQQTPGFSLALGLVVQGLSVSGHGKAEDIHPRLLAAWI
KILLAEGCPTMQRLAAVNGLVALVGSESYLIQQSRELELSSQQQSRLNEVIRAITQIISF
SGAIGLQSNSACLVGHLHLAHMSTSHSHTAVPQDFSYLSEKSLIRSIIDFLTEAGKKGPE
FAHPAMVKTALTPLASVGASFQYPPINWSAVLSPLMRLSFGEDVQHQCVVLAACQAQSSQ
SAGLFLGSWLSPPLVHSLSSQTRAQLYESLGLWMKHVAEDKLQVHMESLGLQHFQEELRP
QRLSLCRSLLQGLAQAMALPNPPNSCWTILCSSSEKIFSLMPNHIQDNEVDLYVGIAKCL
SEMSDAEIERITRVTEVHMEKTCFVLAYLTSQGRVPLLGLNDVIAGVLRGWPSRRVGWLL
LQTFYQCRLATNPNTGVLKRMEWLLELMGHIRNVAYGATPVTCGDTKPATDFLFQVFAAA
VVSWGDHFMPRLLGIRAQWFPWQPDSKPQTLHHSLYGEESLTDHALPQCMLGMSHSLAQL
LDKEPWSSQAHKFIDWLFSITEGPEQNLSAATISTAKAALLALKSSAEFKKKAVWTRAYG
W
NT seq
5406 nt
NT seq
+upstream
nt +downstream
nt
atgacggagagtttgaagataggatttgatttccccagccctgtcatacaggcccagacg
gtgagacatcttgttgctgctgtgctaaaggagaaagggccaaatgggcaaatcacccag
tcctccacccagggtctagcgttggaggctctgtggcagcagtgctgcagtgactgcacg
ctggtgcgttcagccgtctgcgatgccattgtgctgctggtggagcagggccacgcagac
ctgcactacgtcctcaacagtgtcctcaacctcctgccctctgctagaaatgtccagggg
ctgatcaaggtgattggtcggctgctccagatgcaggcagaccagagggacagagaaaca
gccttcacctgtccttactccatcaggagcagccctcacccttacatcactgcgctggag
caccgagcggactgctggccaaccctgctgctggagattgatgacttcattcagcaggct
gctgacagaaatgaagcagtctacatcagcatgctggcccccttcctatgctacctgtac
tgtgaacctcagaggcagacccagcatgccctcctgcgccacagtctcctgcgggtgctg
ctgcccccacaacctggagctgggacggtcctgcagagctcaacggtgtccgacagcctg
ctgctctgcctctgtcagctggtgccacacatgcaggtggacagtgtggaggcggtgcta
gagctgtgtgggttcctgggcgctctgctccagggtctggccccggccacggagcagcgc
tggaggagccagagggtcgggctgctgctgcagctgctctgtgcctgccagcgctgcctc
aagttaaacggagactgccgacctcttctcaacgtgttacagcagctcctacctgcctgc
caacaggagctgccattggacgagctgttgatgggagtggccatgctcctgctggaggtc
cctgcatcccagcagaccagcctgctccatctggctctgaccttagtgtgtgagcaggct
gagctggcgccctggctgagtcccatcctggttctccccgtgctgcagctgctgtcctgc
gcggccctcagcgagccgctggccgaccgacgcacacacagcctgaaccaggacctggcc
catcgcctgctgcgcagcattagcagcaggggcacggagaaaccccggcagtccagtcca
ccattggcacttcccctaacttcctggtatagcgagctcagcgtgactctatccacactg
cgtagagtggcagatgaccctgcggcgacagctgattggctgctgtcgctcaactctgcg
ctgttgtccaaccagagccagctctgctccctcagcctcatggtgagccatctgatcatc
acggctcaggaagacgtctgccagctggctctgaaggccagccaggccatcgctgcagcc
gagccctgccaggtcccttcccttcttcctgttctgttgttcaaactgggaaaggaaaat
aatccagcgctggctcacgctgtgctgaactgcctgcccaacctcgggactcacaagctc
tgtgtccccatggtgctacagactctccacatgctggccagcgccccaaagctgagagca
gtggcactgcgtctcatgaccgctctgtggaagaaacaggaccgagtgtacccggagctg
cagcgtctgctgggccagcaggacagcagggtggtggtagggagggacttccagtgggag
cagatcctggcccgggcagcctgcctcagggacgtctgcagggagaggccgtaccagcat
ggaggcgacatgttggctgccattatactcactctgaaccagtgcaccagaccagacatg
gcaacccctgctgctctcgccctgcaaggactacaggagctgtgccgggcagaggtagtg
gacatcgtgtcaacgtggagaagtctaggccccgagctgagctgtgactcgcgtccactg
atggtccgagtcatcgctgaacttctggctctggttccccagctcactgccaagtcagaa
gaatatgagaaactgacacaggaggtggtcagctttctctggaattatgctgtgagcaag
gatgtggaggtggccagctgtggttacagggctttggcagattttcctgaagcggtccac
accataaatcttcttcctgaggcggcccgaccagctgcaaagccccctgggaatgaccag
gatgaacaagggaaggaggaggaggaagaagcgaaggatctctccatcccagcttcatct
tatgtaaagctgatggctctcacccctgtctctgttctaccagccttcgagctcttcctg
acctcactggtgaagcaggagatgagtcagatgccacggggggtgtacttctctgccctg
aggggggggaacctgcgttcagaccagggtaaaacaatggcagggattccctcattcatg
ctgaaaacctacgagaaaaacaagcagcctgggctgaagcctggactagcagctggactg
ctgctctgttatgagctacctgtgcagacggaccgtgacggcagaccgatcgatcgtttc
ctcttgagccgcagccgcagctaccagcagaccttggcagccctcattcatgaagtgaac
atccagccgtctgaatggcaccgtgctctcctcctgccccaggcctggcgagggttcatg
agccgagcgttccacgctgtcctacagggtcgacgtgctgatttggagatgcagcagaaa
caaggcaaagaagaagcacaggagctgcagtacaaacaacactgtgcctggctgtgggcc
agagatcagctgacagacatcatcaaagctgctgcaaaggacagtcctgttgtccagggg
aactccatcctggctctgagcagcctggctgctgtcctggctaaatatgagagcaacctg
cctgctgatagcgacggcagcctcagggctggcccagagtttgtgcccacagccagctgg
ttggccatggtgctccacaccctgctcagcatcagcagcagcagctgcaaggccagagga
caagtcttcccatggttcctacatcgctcctactcgggggagaacacagcgagtgctatc
gctcgctcctgtgccagcctggcactgtccctgttggtcccggtgctggtggtgtggcag
cgggacggtctggcccaggtcctgtcggcgctgcaggccagcctgccaggctcccccact
gccgacgactcccaggctgtccagttccactcgggcctggcgctcggcatggtgctgtcc
agtctgcagcagcagcgcctgagtgatgtctctgtggacgctgatctcctctccagctct
ctggacgctctggaaagttgctccttcaaccccgacctggaatacaatactggctgtatg
ttaggcctggctctggtgctcgcagctctctgcagtagtggacagacggatcaacatgtc
cgcatcacccaaacactggacaaacttctgtccaacctgcaggacagcagtgggcaggga
cgcatgctgcaggaggtcttggcgtactctgtggcatgtgtgggtgtctcagccttcggc
ggaggccttatagatgctgccaaggctgaggaggtgatgagcactctgcgcaccctgact
gaggagagccaacagactccaggcttctccctggctctgggcttggttgttcaaggcctg
tctgtgtccggccatggcaaagcagaggacatccatcctcgtctgctggctgcttggata
aagatcttattggctgagggttgtcccactatgcagcggctggcggccgtcaacggcctg
gtagctctagtaggatctgagagttacctcatccagcaaagcagagagctggagctttcc
tcccagcagcagagccggctgaacgaggtcattcgagccatcacacagatcatatcattc
tcaggagccattggtctgcagtccaacagtgcttgtttggttggtcatctgcatctggcc
catatgtccaccagtcacagtcacacagcagttcctcaggatttcagttacctctcagag
aaaagtctcatcagatccatcattgacttcctcacagaggcaggaaaaaaaggtccagag
tttgcccatccagctatggttaagactgctcttactcccctggcgtcagttggagccagt
ttccagtacccgcccatcaactggagcgccgtgctgtctcctctgatgaggctcagcttc
ggagaggatgtgcagcatcagtgtgtggtgctggcagcgtgtcaggctcagtcttctcag
agcgccggcctctttctgggctcctggctctcacccccccttgtgcacagtctcagttcc
cagactcgggctcagctgtatgagagtctgggcctgtggatgaagcatgttgctgaggac
aagctgcaggtccacatggagagtctgggcctgcagcacttccaggaggagctccgcccc
cagcgtctgtccctgtgccgctccctgctgcagggcctggctcaggccatggctctccca
aacccccccaacagctgctggaccatcctctgctccagctcggagaagatcttctccctg
atgcccaaccacatccaggataatgaagtcgatttgtatgtgggaatcgccaagtgtctg
tcagagatgtcggatgcagagattgagcgaatcacacgagtcacagaggttcacatggag
aagacctgcttcgtcctggcttacctgacctcccaaggcagagttcccctgctgggcctc
aatgatgtcatcgccggggtgctccgtggttggccgagccgcagagttggctggctcctc
ctgcagactttttaccagtgtcgcctggccaccaatcccaatacaggcgttttgaaacga
atggagtggctcctggagctgatgggacacatccgaaatgttgcatatggtgcaaccccg
gtcacatgtggagacaccaaaccggccacagacttcctgtttcaggtttttgctgctgct
gtagtttcctggggtgaccacttcatgccccgcctccttggcattagggcccagtggttc
ccatggcaacccgactccaagccccagactctgcatcacagtctgtatggtgaagagtca
ttgactgaccatgccctgcctcagtgcatgctgggaatgtcccacagcctggctcagctg
ctggacaaagagccttggagcagccaggcacacaagttcatagactggctcttcagcatc
acagagggtcctgaacagaatctgtcagccgcaaccatcagcacagccaaagcggccctg
ttggccctcaagtcctccgctgagttcaagaagaaagctgtgtggacccgagcatacgga
tggtag
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integrated database retrieval system