Sander lucioperca (pikeperch): 116050145
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Entry
116050145 CDS
T07345
Symbol
ptchd4
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
sluc04990
]
116050145 (ptchd4)
Domain-containing proteins not elsewhere classified [BR:
sluc04990
]
Other domain-containing proteins
Patched domain-containing proteins
116050145 (ptchd4)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
DUF7041
Motif
Other DBs
NCBI-GeneID:
116050145
NCBI-ProteinID:
XP_031156038
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All DBs
Position
19:complement(4576060..4647819)
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AA seq
923 aa
AA seq
DB search
MCFIGGDGASGSWILWRMLRQVIHRGLKASFYWLGLFVSRHPVFFLTVPAVLTIIFGSTV
LSRFKPETDLEVLVAPTHSLAKIERSLANSLFPIDQSKHKLYSDLHTPGRYGRLILLAKS
GGNILELADQVLQVHKQVLDLHVNYKGFNYTFAHLCVLSHRDKRCLLDDIITIFEDIRLA
VLSNSTFHKVPVSYPNTTLKDGRVSFIGHQLGGVSFSANSRDQQVKFARAVQITYYLRNH
GPVVQDAIAERWENEFCTLVSRLSMAEAPHAPDQLHIQSLTSFSLWRDFHQTGVLAKGEV
LVSLVLVLLAATISSSMRDCLRGKPFLGLLGVLTICIANVTAAGIFFISDGKFNSTLLGI
PFFAMGHGTKGVFELLAGWRRTRENLPFKERVADAFADVMVCYTMTSSLYIITFGMGASP
FTNIESVKIFCQSMCVAILVNYFYVFSFYGSCLVFAGQLEQNRYHSVFCCKIPSVEYLDR
QPTWFKTMMSDGHDLSTHHDSVPYQNHFIQHFLREHYTEWITNTYVKPFVVILYLIYASF
SFMGCLQISDGSNIVNLLASNSPSVSYALTQQKYFSNYSPVIGFYIYEPIEYWNSTVQEH
LKTLSHGFNKISWMDNFFHYLRVVNVSASTKSDFITILKGSFLRSPEYQHFTEDIIFSKN
RETDEYDIIASRMYLVARTTEKKREEVVELLEKLRPLMLINSIKFIAFNPTFVFMDRYSS
SVISPILTSGFSVLTILILTFFLVINPLGNFWLILTVTSVELGVLGLMTLWNVGMDSISI
LCLIYTLNFAMDHCAPHLYTFVLATEHTRTQCIKLALEEHGAAILQNASCFVIGIMPLVF
VPSNLTYTLFKCSLLTAGCTVLHCFVILPVFLTFFPPSKKRHKKKKRAKRKERERERERE
REREREEIECIEVRENPDHVTNV
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgtgcttcatcggaggagacggggcatctggaagctggattttgtggaggatgctgcgg
caagtgatacacagagggctcaaggcttcgttctactggctcggcttattcgttagcagg
cacccggttttcttcctcactgtccccgcggtcctcaccatcattttcggatctaccgtg
ctgagccgattcaagccggagacggacctggaggtgctggtcgcccctactcacagcctc
gctaagatcgagcggagtctcgccaacagcctgtttcccatcgaccagtcgaagcacaag
ctgtactcggatttgcacaccccgggcagatatggcaggctgatcctgctggccaagtcc
ggggggaacatcctggagctggccgaccaggtcctgcaggtccacaagcaggtgttggat
ttgcacgtcaattacaagggattcaattacacgttcgctcacctctgcgtgctgagccac
agggacaagcgctgcctcctggatgatatcatcaccatcttcgaagatatcagactggct
gtgctttccaacagcactttccataaggtgcccgtgagctatccaaacacaacattaaag
gatggccgtgtgtccttcataggccaccagctgggcggtgtgtccttctcggccaacagc
cgcgaccagcaggtcaagtttgcccgcgctgtccagatcacctactacctccgcaaccat
ggaccagtggtgcaggatgccatcgccgaacgctgggagaatgagttctgcaccctggtc
agccggctgtccatggccgaggcgccccacgcgccggaccagctccacatccagtcgctc
acttccttcagcctgtggcgggacttccaccagacgggcgtgctggccaagggggaggtg
ctggtcagcttggtgctggtgctcctggccgccaccatctccagctccatgcgggactgc
ctgagggggaagccgttcctgggcctgctgggcgtgctcaccatctgcatcgccaatgtg
acggccgcagggatcttctttatatcggacgggaagttcaactctacactgctggggatc
ccattctttgccatgggccatggaaccaaaggggtcttcgagctgctggcaggctggagg
agaacaagggaaaatctccccttcaaggagcgcgtggcggacgcttttgctgatgtgatg
gtgtgctacaccatgaccagctcactctacatcatcacctttggcatgggagctagccct
tttaccaacatcgagtcagtgaaaattttctgtcagagcatgtgcgttgctatcctggtc
aactacttctacgttttctctttctacggctcgtgcctggtctttgccggacagctggag
cagaaccgctaccacagtgttttctgttgtaaaatcccctcagtggagtacctggaccgc
cagcccacatggtttaaaaccatgatgagtgacggccatgacttgtccacgcaccacgac
agcgtcccctaccagaatcacttcatccagcacttcctgcgtgagcactacacagaatgg
attaccaacacctatgtcaaaccctttgtggtcattctatatctcatctacgcctctttc
tcattcatgggatgtttacaaatcagtgatggatcaaacatcgtgaacctgctggctagt
aactctcccagtgtttcgtatgcactgacccagcagaaatactttagtaactacagtccc
gtgattgggttttacatttacgagcccatcgagtactggaactccacggtgcaggagcac
ctgaagactctaagtcatggcttcaacaagatctcttggatggacaactttttccactac
ctgcgggtggtgaatgtgagtgcttcaaccaagagcgacttcatcaccatcctgaagggc
tctttcctgcgcagcccggaataccagcacttcactgaggacatcatattctccaagaac
cgtgagaccgatgagtacgacattatcgcctcacggatgtacttggtggcacggacgaca
gagaagaagcgggaagaggtggtggagcttctggaaaagcttcgtccgttgatgctgatc
aacagcatcaagttcattgccttcaatcctacgtttgtgttcatggaccgctacagctcc
tccgtcatctcacccatcctgacctcaggcttcagcgtactcacaatcctcatcctcact
ttcttcctggtcatcaaccccttggggaacttctggctcatcctcacggtaacgtccgtg
gagctgggcgtcttgggtttgatgaccctctggaacgttggcatggacagcatctcaatc
ctgtgccttatttataccctcaactttgccatggatcactgtgcaccacacctgtacact
tttgtgctagccaccgagcacactaggacgcagtgcatcaagttggcactggaggagcac
ggggcagccatcctgcagaatgcatcctgctttgtgattgggatcatgcccctggtgttt
gtgccttccaatctgacctatacactgttcaagtgctcccttctcaccgcgggctgcacc
gtgctgcactgctttgtcatcctgcctgtcttcctgaccttcttcccgccatccaaaaag
agacacaagaaaaagaaacgggccaaacgcaaagagcgggagagggaaagggagcgggag
agggaaagagaaagggaggagatagagtgcattgaagtcagggagaatcctgatcatgtg
acaaatgtctga
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