KEGG   Sander lucioperca (pikeperch): 116050237
Entry
116050237         CDS       T07345                                 
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1 isoform X1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
sluc  Sander lucioperca (pikeperch)
Pathway
sluc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sluc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    116050237 (cstf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sluc03019]
    116050237 (cstf1)
Messenger RNA biogenesis [BR:sluc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     116050237 (cstf1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd WD40_Gbeta CSTF1_dimer Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_NOL10_N NBCH_WD40 WDR90_beta-prop_4th Beta-prop_Aladin ASA1 Beta-prop_SCAP WD40_RFWD3 Beta-prop_VPS8 CFAP251_N PAC11 Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_NWD2_C Ge1_WD40 Beta-prop_NUP159_NUP214 DSE1_N Beta-prop_HPS5 Beta-prop_SPT8 PROPPIN DUF7099 Beta-prop_WDR11_1st Frtz
Other DBs
NCBI-GeneID: 116050237
NCBI-ProteinID: XP_031156070
Ensembl: ENSSLUG00000016501
UniProt: A0A8D0D404
LinkDB
Position
6:307861..329749
AA seq 431 aa
MFRPKPTLKDRQHLYKLIISQLLYDGYTSIANSLINEVKPQNVVSPSEQLMQLAKTGMEN
DDSAVQYAIGRSDTVAPGVGIDMEFDADVQTMSPEASEYETCYVTSHKGPCRVASYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFLLVGTQHPT
VRLYDANTFQCFVSCNPLDQHTDTISGVSYNPTANSYVTCSKDGSIKLWDGVSNRCVSTF
EKAHDGAEVCSAIFSKNSKYILSSGKDSVVKLWEISTGRTLVKYTGAGLSGRQMHRTQGV
FNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRTTTD
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgtttcgtcccaaaccaactttgaaggaccgacagcacctgtacaagctgatcatcagc
cagctgctctatgacggatacactagcatcgccaacagcctcatcaacgaggtcaagcca
cagaatgtagtgtcaccctctgagcagctgatgcagctggctaaaacagggatggagaat
gatgacagtgcagttcagtatgccattgggcgttcagatacagtggcacctggtgtgggt
attgatatggaatttgatgccgatgtccagaccatgtctccagaggcatcagagtatgag
acctgctatgtaacatcccataagggtccatgccgcgtcgcttcatacagccgggatggc
cagctgattgccactggctctgccgacgcttccatcaagatcctggatactgaacgcatg
ctggccaagagtgctatgcctattgaggtgatgatgaatgagacagcgcagcaaaacatg
gagaatcaccctgtgatccgaacactgtatgaccacgtggacgaagtcacctgccttgcc
ttccatccgactgaacagattctagcttctggctccagagattacacactcaaactgttt
gactactcgaagccctctgcaaaaagagcatttaaatatatacaggaagcagagatgctg
cgttcaatctccttccacccatcaggggactttctgctggtgggaacgcagcaccccacc
gtccgcctctacgacgccaacacctttcagtgctttgtgtcctgcaacccgctggaccag
cacacagacaccatcagcggggtcagctacaaccccaccgccaacagctacgtcacctgc
agcaaggacggcagcataaagctttgggatggcgtgtccaaccgctgcgtatccaccttt
gaaaaggcccacgatggagccgaggtctgctccgccatcttctccaagaactccaagtac
atcctgtccagtggcaaagactccgtggtcaaactgtgggagatctctaccggtcggaca
ctggtcaagtacacaggcgcggggctgagtggccgtcagatgcatcggacacagggtgtg
ttcaaccacacagaggactatgtgctgctgccagatgagcgcaccatcagcctgtgctgc
tgggactcgcgcacggccgagaggaagaacctgctgtctctgggacacaacaacatcgtg
cgctgcatcgtccactcgcccaccaatcccggattcatgacctgcagcgacgacttcagg
gcccgcttctggtaccgccgcaccaccacagactga

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