Sander lucioperca (pikeperch): 116050374
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Entry
116050374 CDS
T07345
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sluc00536
]
116050374 (col13a1)
Glycosaminoglycan binding proteins [BR:
sluc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116050374 (col13a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116050374
NCBI-ProteinID:
XP_031156242
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Position
7:complement(28931584..29090071)
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AA seq
736 aa
AA seq
DB search
MDENQKWGVAGKPGDTAASKQPLWRNWRDMSAVTICITMSVLCLGVCSVVCVRSSELQSR
IVSLEQQQRGAWMLSLEQVEPVILGRLDQILDEKLAARLPKTREAREAPHSCLCPPGPPG
PPGRAGFPGDKGSMGIPGRMGLKGQAGEKGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGP
IGLDGKSGQSGPKGDMGQRGAKGIPGEPGPKGEKGVCGDYTHRGLFVQDLPLKTLAALRS
SQALMLKQGEPGAQGPPGPPGPPGLPGTPGLNGATGPMGKPGEPGKPGKDPRLLPGMKGE
PGVPGQKGDRGDIGPLGPEGSKGDMGDQGIKGDEGKRGFPGERGEKGEPGFMGAPGLKGQ
AGIPGIPGIPGKRGYRGEKGDPSIAAQGIKGEPGSPGLPGLMGPKGDTGDKGEKGEAGLE
GPAGPRGPAGPTGEPGKAEIQNNENDIRNIPMMGPPGLPGPPGTPGLPGTKGEVGLPGAP
GLDGEKGPRGKPGEPGPAGPAGPEGPRGESGVMGFAGPKGDKGDMGPSGSPGLDGPTGEK
GASGAPGPIGLPGSMGLKGAPGDGGRSEMIYGPPGPPGPPGPVGPAGAQGFSGPKGEPGI
GIRGEKGATGQKGDKGDRGHLGLPGAHGLDGRPGPVGLIGPSGVSGPAGPKGERGEKGDA
GLPGPIGPQGIPGLVGPQGLKGNRGERGKKGNRGAKGDKGDQGAPGLDAPCPLGDDGLPV
PGCWNKGQHPFQLAKK
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggatgagaatcagaagtggggagtcgctggtaaaccgggtgacacagcggcttccaag
caaccgctgtggaggaactggagggatatgtctgcagtaacgatttgcatcacaatgtct
gttctgtgcctgggagtttgcagcgtggtttgcgtgcggagctcggagctgcagagccgg
atagtaagtctggagcagcagcagcggggcgcgtggatgttgtctctggagcaggtggag
cccgttatcctgggccggctggaccagatcctggacgagaagcttgcagcgcgactaccg
aagacccgagaggcgagggaggctccccacagctgcctgtgccccccaggacctccaggt
cctcctggacgggcaggctttccgggtgacaaaggaagtatggggattcctgggagaatg
ggcttaaaaggacaagcaggggagaagggagcaccaggcgagccaggtctgtctatcatt
ggaccaagaggacctcctggacaacctggaacaagaggattcccaggcttcccaggtcca
attggcttggatggcaaatctggacagagtggaccgaagggagacatggggcagcgtggt
gctaaaggaatcccaggggaacctggacccaaaggggaaaagggcgtatgtggagactac
acacaccggggcctctttgtgcaggatcttcctctgaaaaccctggctgccttgcgctcc
agtcaggctctgatgttgaagcagggcgagcctggagcgcagggacccccaggacctcca
ggacccccaggactcccagggaccccaggcctgaatggagccactggcccaatgggtaag
cctggtgaaccaggcaaaccaggaaaagacccaaggcttttaccaggcatgaagggtgag
ccaggtgtaccaggacaaaagggggatcgaggtgatattggccctctaggtcctgaaggc
tcaaagggagatatgggagaccaaggaattaagggagatgaaggaaagagaggtttccca
ggagagaggggagagaagggagaaccaggtttcatgggcgctcctgggttaaagggccag
gctggcatccctggcatccctggcatccctggcaagaggggctacaggggtgagaaagga
gatccgagcattgcagcccagggaattaaaggagaaccaggttcaccaggacttccaggc
ctaatgggacctaagggtgacacaggcgacaagggagagaagggggaagcaggccttgaa
ggcccagctggaccaagaggtcctgcaggcccaactggggagccaggaaaggctgaaatc
caaaacaatgaaaatgatattcgcaacataccaatgatgggcccacctggattacctgga
cctccagggaccccgggactccctggtaccaagggtgaagttggtctgccaggtgctcca
gggctggacggagagaagggacccaggggaaagcctggagagcctggtcctgcaggccca
gccggtcctgaaggccccagaggggaaagtggtgtcatgggctttgcgggacccaaagga
gacaagggagacatgggtccatctggatcacctggtttagatggccctactggtgaaaag
ggggcttcaggggcccctggccctattggattacctggctcaatgggcctaaaaggtgca
cctggagatggtggaaggtcggaaatgatctatgggcctccagggcccccaggacctcca
ggaccagttggcccagcaggagctcaaggattttcagggcctaagggagaaccaggcata
ggcattagaggagaaaagggagcgacgggtcagaagggcgacaagggagacagaggccat
cttggacttcctggggctcatgggttagacggcagaccgggtccagtgggtctaatagga
ccatcaggtgtgtcagggccagcaggaccaaagggagagagaggtgaaaagggagatgca
ggattaccaggaccaatcgggcctcaaggcatccctggtttagtaggaccacaaggactc
aaaggaaaccggggagagaggggcaagaaaggcaacaggggggccaaaggggataaggga
gaccaaggagcacctggattagatgccccctgtccgttgggagacgatggcttacctgta
ccaggatgttggaataaaggtcaacatcctttccaactggctaagaagtag
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