Sander lucioperca (pikeperch): 116051349
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Entry
116051349 CDS
T07345
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04510
Focal adhesion
sluc04512
ECM-receptor interaction
sluc04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116051349 (col2a1b)
04518 Integrin signaling
116051349 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116051349 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sluc00536
]
116051349 (col2a1b)
Glycosaminoglycan binding proteins [BR:
sluc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116051349 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
116051349
NCBI-ProteinID:
XP_031157549
LinkDB
All DBs
Position
6:7710005..7758680
Genome browser
AA seq
1491 aa
AA seq
DB search
MFSFMDSRTVLLLVATQVCLLTVVRCQDEDDQEDVFSCTQDGQRYSDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADQSPPIGAPGAKGQKGEPGDITDVV
GPRGPSGPMGPPGEQGLRGARGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEAGEPGQA
GPMGPRGPPGPSGKPGDDGEAGKSGKPGDRGPAGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGAVGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPP
GPVGTSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPP
GVQGAHGPQGEEGKRGPRGEAGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPA
GASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLGGAPGLRGLPGKDGETGAAGPPGPAGSAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGTGGAQGPPGLQGMPGERGASGIPGPKGDRGDLGEKGPE
GAPGKDGGRGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGSDGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPSGKDGPKGVRGDGGPPGRQGDAGLRGAAGAPGEK
GDAGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDRGNTGPVGAPGAPGAPGAA
GPVGPTGKQGDRGESGAQGPSGPSGPAGARGMPGPQGPRGDKGEVGESGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPAGKDGGNGLPGPIGPPGPRGRSGET
GPSGPPGNTGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVRPKPASIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAPNTASIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGTDQEFGVEVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctacttgtagcaacccaagtctgtcta
ttaactgttgtaagatgtcaagacgaggacgaccaggaggatgtttttagctgtacacaa
gatggacagcgctatagtgacaaggacgtatggaaaccagagccttgtcgcatctgtgtg
tgtgacactggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgcccc
aaacctgaaatcccattcggagagtgttgccccatctgcgcagctgaccagtctccaccc
attggagcacctggagctaagggtcagaaaggtgaacccggagacattaccgatgttgta
ggaccaagaggaccaagtggcccaatgggcccaccaggagagcaaggactccgcggagca
agaggagataagggagagaagggaagccctggtccccgcggcagagatggtgagcccggc
acccccggaaaccccggcccccctggacctccaggacctaatggaccccctggccttggt
ggaaactttgctgctcagatggctggtggattcgacgagaaggctggaggcgcacagatg
ggtgtgatgcaaggaccaatgggccctatgggtcccagaggaccacctggccccaccgga
tcacctggcccacaaggtttccaaggcaacccaggagaggctggagagcccggacaggct
ggcccaatgggtccccgtggccctcctggaccttctggaaaacctggagatgatggtgag
gctggcaaatctggcaaaccaggcgaccgtggacctgcaggacctcagggagctcgtgga
ttcccaggaactcctggcctgcctggcatcaagggacacagaggttatccaggtcttgat
ggtgcaaagggagagactggagctgttgggtctaagggtgagtctggtgctcccggagag
aatggcgctcctggacctatgggacctcgtggtttgcctggtgagagaggacgtcctgga
cccagtggagttgctggtgcacgtggaaatgatggcttgcccggtcctgctggtccccca
ggccctgtcggtacctctggagctccaggcttccctggctctcctggttcaaagggggaa
gctggtcccactggtgctcgtggacctgagggtgctcagggaccccgtggagagtctggc
actcctggatcacccggaccttctggcgcttctggaaaccctggtactgatggtatccct
ggagccaaaggatcagctggtgctcctggtatcgctggtgctcctggtttccctggacct
cgtgggcctcccgggcctcaaggagcaactggacctcttgggcccaaaggaacatctgga
gacccaggtatcccagggttcaagggagaggctggacccaaaggagaaattggaccgcct
ggtgttcagggagctcatggcccacaaggagaagaaggcaagagaggacccaggggtgag
gctggtgctgctggaccacttggacctcctggagagagaggagcccccggtaaccgtggt
ttccctggtcaagacggtctggctggtcccaagggagcccctggtgagcgtggacctgct
ggtgccagtggtcccaagggtgccaacggtgaccctggccgtcctggagagtctggtctg
cccggtgccagaggcctgactggacgccctggtgatgctggtcctcaaggcaaagttgga
ccttctggagcttctggtgaggacggtcgcccaggcccccccggcccacagggagcccgt
ggacagcctggtgtcatgggattccccggacccaagggagcaactggtgagcctggcaag
tcgggagagaaaggactgggtggagctcctggtctgagaggtctgcctggaaaagatgga
gaaaccggtgctgctggaccccccggccccgccggctctgctggagagagaggagagcaa
ggacagcctggtccctcaggtttccagggtctgcctggacctcccggcccccctggtgag
ggaggcaagcctggagaccagggtgttcctggagagggtggagctgctggtgctactgga
cccagaggagagcgtggtttccccggagagagaggagctgccggccctcagggtctgcag
ggaccccgaggtctgcctggaactcctggaactgacggacccaagggagccattggacct
gctggtactggtggagctcagggaccccccggcctgcagggtatgcccggagagagagga
gcttctggcattcctggacccaaaggagacagaggtgaccttggagagaaaggacctgaa
ggtgctcccggcaaagacggcggtagaggtctcactggtcccattggtccccctggtcct
ggtggtcccaacggcgagaagggtgaatctggtcctgccggtccttctggtgctcctggt
acccgcggtgctcctggtgacaggggtgagactggacctcctgggcctgctggatttgct
ggaccccctggttctgatggtcaaccaggaatcaagggagagcagggagaatctggacag
aagggtgacgctggtgcccctggaccccaaggaccctctggtgcccctggacctgcaggt
cctaccggtgtttttggacctaaaggtgctcgtggtgctcagggacctcctggtgcgact
ggtttccctggagctgccggccgagttggaccccctggtcccaatggtaatcctggacct
gctggtccagccgggccttccggtaaagatggacccaagggtgtgaggggagatggtgga
cccccaggcagacagggtgacgctgggcttcgtggtgctgctggggctcctggagagaag
ggagatgctggagaggatggtccccctggtcccctcggtccttcaggtcctcagggtttg
gctggtcagcgcggtatcgtgggtctgccaggacagcgtggtgagagaggtttccccggt
ctgcccggaccttctggtgagcccgggaagcagggagctcctggtggcagcggagaccgc
ggaccccctggacctgttggaccacctggactcactggacctgcaggagagcctggcaga
gagggcaatcctggatctgatggacctcctggtagagatggtgctactggaatcaagggt
gatcgtggtaacactggtcctgttggtgctcctggagctccgggcgcgcctggtgctgct
ggcccagttggccccactggcaaacagggagaccgaggagagtctggtgcacaaggacct
tctggaccttcagggcctgctggagccagaggaatgcctggaccccaaggaccccgcggt
gacaagggtgaggttggagagtccggtgagcgaggacagaagggacacagaggcttcact
ggtctgcagggtctgcccggacctccgggtcaagctggagaccagggtgctactggacct
gctggaccttctggacaaagaggaccacctggacctgttggccctgctggaaaggatggt
ggaaatggtctgccaggacccattggaccccctggacctcgtggtcgcagtggagagacc
ggtccctctggtcctcccggaaacaccggaccccctggtcctcctggtccccctggccct
ggcatcgacatgtccgccttcgctggtctgggtcaaactgaaaagtcccctgatcctctc
aggtacatgagggctgaccaggcttccggaaacctccgtcagcatgatgctgaggtcgac
gccacgctcaaatctctcaacaaccagattgagaacatccgcagccccgagggatccaag
aaaaacccggctcgcacctgcagagacctgaagctctgccatcctgactggaagagcgga
gagtactggattgatcccaaccagggctgcaccgtcgatgcaatcaaggtcttctgcaac
atggagacaggagagtcctgcgtcagaccgaagcctgccagtatccctcgcaagaactgg
tggtccagcaagagcaaggaccgcaaacatgtctggttcggagagacaatgaatggaggt
ttccacttcagctatggtgatgacagcctggcacccaacacggcttccattcagatgact
ttcctgagactgctgtccaccgaggcttctcaaaacctcacctaccactgtaagaacagc
gtggcctacatggacgcctcaacgggcaacctgaagaaggctgtgctgctgcagggctcc
aacgacgtggagatcagagccgagggcaacagccgcttcacttacagcgtgatggaggac
ggctgcacgaaacacacgggacagtggggcaagacagtgatcgaatacagatcgcagaag
acctctcgtctgcccattgtagacattgcccccatggatattggaggaacagaccaggag
tttggagtcgaagtcggggcagtctgcttcttgtaa
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