KEGG   Sander lucioperca (pikeperch): 116052183
Entry
116052183         CDS       T07345                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
sluc  Sander lucioperca (pikeperch)
Pathway
sluc03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:sluc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    116052183 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sluc03021]
    116052183 (taf5l)
   03036 Chromosome and associated proteins [BR:sluc03036]
    116052183 (taf5l)
Transcription machinery [BR:sluc03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     116052183 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     116052183 (taf5l)
Chromosome and associated proteins [BR:sluc03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     116052183 (taf5l)
    STAGA complex
     116052183 (taf5l)
    TFTC complex
     116052183 (taf5l)
    SAGA complex
     116052183 (taf5l)
    SLIK complex
     116052183 (taf5l)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd TFIID_NTD2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_SCAP NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_IFT140_1st RMC1_N Beta-prop_HPS5 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_Vps41 Tricorn_2nd Beta-prop_WDR19_1st PEP5_VPS11_N Beta-prop_IP5PC_F PROPPIN WD40_like Nbas_N WD_LRWD1 TRIP13_N
Other DBs
NCBI-GeneID: 116052183
NCBI-ProteinID: XP_031158568
Ensembl: ENSSLUG00000013839
LinkDB
Position
4:21859219..21866176
AA seq 601 aa
MKRVRTEQIQHAVTQYLKRRQYVDTDGSLKGAKLFQSAEEMAASLTAQTESGCANIVSAA
PCQSDPQQYETQYSRLRSFLSETEISWAKEVSSLLYPLFVYLHLDMVRCGMKGAVDGFYS
RFHGAFLQDGEQRATIEQLRHVLTAQDVAANPKLSAFLEHKYVVHLTEPAYSYLLRYLQS
EDNGALCRALSTHLQVEVSASRRTDYQLYGAAGGPTAAPNSTSSSWAGLDGAEGGEGVEV
PAGIPQSEAALEALQDCIKKVREGPPTLTTVCFYAFHHTEQTLNTAEVSADSRLLAAGFD
SSTVKLWSLRARKLKAKPHRADVSLIHLACDVLEEEADEEDASGSEIKTLRAHSGPVFRT
AFLTDSSGLLSCSEDTTIRYWDLGSFANTALYRGHAYPVWDVDVSPCSLYFASGSHDRTA
RLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVRLFTGHR
GPVLSLAFSPNGKYLASAGEDQRVKLWDLASGALFKDLRGHTDSVTSLSFSPDSSLVASS
SIDNSVRVWDIRNSHGGTPADGSSGELVGLYTGNTSNVLNVQFMACNLLLVTGTAQEKAE
P
NT seq 1806 nt   +upstreamnt  +downstreamnt
atgaagcgtgttcgcactgagcagatccagcatgccgtgactcagtacctgaagcggagg
cagtatgtggacacggatggctccctgaaaggagccaagctcttccagtcagcggaagag
atggctgccagcctcacagcgcagacagagtcgggctgtgccaacatcgtctcggctgct
ccctgccagtccgacccccagcagtacgagacccagtactccaggctgcgctcctttctg
tcagaaactgaaatatcctgggcgaaggaggtgagcagcctcctctacccgctcttcgtc
tacctccacctggacatggtgcgctgtggcatgaagggggccgtggacggtttctacagc
cgtttccacggcgcctttctccaggacggcgagcagcgcgccaccatcgagcagctccgc
cacgttctcaccgcgcaggacgtcgccgccaaccccaagctgagcgccttcctggagcac
aagtacgtggtccacctgacggagccggcctacagctacctgctgcgctacctgcagagc
gaggacaacggcgccctctgccgggctctcagcacacacctgcaggtggaggtctccgcc
tcgaggcgcacagactaccagctgtacggcgctgccggcgggccgaccgccgccccgaac
tccacctcctcctcctgggcgggattggacggggcggagggcggcgagggggtggaggtc
cccgcagggatcccgcagagcgaggcggccctggaggcgctgcaggactgcatcaagaaa
gtccgcgagggccccccgacgctcaccaccgtgtgcttctacgccttccaccacacggag
cagacgctgaacacggccgaggtgtcggccgacagccggctgctggccgccggcttcgac
agctccacggtgaagctgtggagcctccgggccaggaagctgaaggccaaaccgcatcgg
gccgacgtgtcgctcatccacctggcctgcgacgtactggaggaggaagcagatgaagag
gacgcctccggcagcgagataaagacgctgcgagcccacagcggcccggtgtttcgcacc
gccttcctgacggacagctcgggcctgctctcctgctccgaggacaccaccatccgctac
tgggacctgggcagcttcgccaacacggcgctgtaccggggccacgcctacccggtgtgg
gacgtggacgtcagcccctgcagcctctacttcgccagcggctcgcacgaccgcaccgcc
cgcctctggaccttctctcgcacttacccgctgcggctctacgccggccacctcgccgac
gtcgactgcgtcaagttccacccaaactccaactacctggccaccggctccacggacaag
actgtccgtctgtggagcacccagcagggggcgtccgttcgcctcttcaccggccaccgc
ggcccggtgctgtccctcgctttctcccccaacgggaagtacttggcgtcggccggcgag
gaccagagggtgaagctgtgggacctggcgtcaggggcgttgttcaaagacctgcgcgga
cacacggacagcgtcaccagcctgtcctttagccccgacagcagcctggtggcgtcgtcg
tctatagacaactcggtgcgggtgtgggacatccggaactcccatggcgggacgccggcc
gacggatcgtccggcgaactggtgggactgtacacggggaacaccagcaacgtgctcaac
gtgcagttcatggcctgtaacctgctgctggtgacggggaccgcacaggagaaagcagaa
ccgtag

DBGET integrated database retrieval system