KEGG   Sander lucioperca (pikeperch): 116052539
Entry
116052539         CDS       T07345                                 
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39
  KO
K13217  pre-mRNA-processing factor 39
Organism
sluc  Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:sluc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sluc03041]
    116052539 (si:ch211-114c17.1)
Spliceosome [BR:sluc03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    116052539 (si:ch211-114c17.1)
SSDB
Motif
Pfam: HAT_PRP39_N HAT_PRP39_C TPR_14 Suf HAT_Syf1_CNRKL1_N TPR_19 HAT_Syf1_CNRKL1_C TPR_2 TPR_16 TPR_12 TPR_11 TPR_MalT HrpB1_HrpK UTP6_C TPR_21
Other DBs
NCBI-GeneID: 116052539
NCBI-ProteinID: XP_031159166
Ensembl: ENSSLUG00000018365
LinkDB
Position
1:30869553..30878071
AA seq 741 aa
MNDVIDTFSIMAAEGCEEMSGNGELEESSDMEASEVPASPPTELAEMSEENGSLAMVPEA
PVVGPDPATFSMPPASEDEEGELPADFERLWNSAHDNPQDFTSWTDLLQYCEQESHMTAS
RRALEAFLTRYPLCYGYWKKFTDLERRAGYNNKAEEVCVQGLQAIPLSVDLWIHYINLLL
GTLDMNLPESPTRIRSVFEDAVVAAGLDFHSDRLWDLYVEWEKEQGNMKNASAVLDRVLK
VPTQLYNTHYEKFKDHLNSHEPKEVLSPEEYEELRTLCRQSQKAERAEQAQEEEEERPPG
EEEPATPEGKDTEELMQKIREQVLVRRDKVYQDNEGEVRKRWHFEDAIKRPYFHVKPLDR
LQLRAWHSYLDWEIAQLNKDTKDSQDGQQDPNQEAIQGSEVAAQPQDQSEDAAVAHDDLR
VRILFERCLIACALYEEFWIRYAQYLESQSVDEARAVFKRACEIHLAYKPNIHMQWATFE
ERHGDLTKARRVLEALEKTLPGLAVVRLRRAALERRAGQLDQSEALLQEAVAESKEKPTL
HAFYSIKLARLLLKLGRNPSRARRVLQEALEISPDNDKLHLNLLELEVSGDPWASAEAVQ
ECVTRALAAPLAPHTKILFSQRGLQFAEDYSNSIQSVLSVYEEHQKLLKELGGTKREAEN
GDEDPEKMSKSEDGSAVAVSASVPPTMPHVPITTPPPPVMGADANAQAGYGGYSNWYQQP
QYAGYGYQNTWNYNQGYYPPS
NT seq 2226 nt   +upstreamnt  +downstreamnt
atgaatgacgtcatcgatacgttttccatcatggcggcggaaggctgtgaggagatgagc
ggcaacggggagctagaagagtcttcagacatggaggcttctgaggttcctgcatcacct
ccgactgagttggcagagatgtcggaagagaacggcagtctcgccatggtccctgaggcc
cccgtagtaggccccgaccctgctaccttctcaatgcccccagcttcagaagacgaggag
ggagaactgcccgccgactttgaacgcctgtggaattccgcccacgacaatcctcaagac
ttcaccagctggactgacctgctgcagtactgtgagcaagagagtcacatgacagcgtca
cgcagagcgctagaggccttcctcactcgctacccgctctgttacggctactggaagaaa
ttcaccgatctggagcgccgtgctgggtacaacaacaaagccgaggaggtgtgtgttcag
ggtctccaggcaatccctctgagtgtagatctgtggatccactacatcaatctgctgctg
ggaacactggacatgaacctgcctgagtcacccacgcggattcgcagtgtgttcgaggat
gcggttgtggcagcaggtctggacttccactcagaccggctttgggatctttatgtcgag
tgggagaaggagcagggcaacatgaagaacgcatcagccgtcctggacagagtccttaaa
gtccccacccagctctacaacacccactacgagaagttcaaggaccacctgaacagccac
gagcccaaagaggtgctttccccggaggagtacgaggagctgaggacgttgtgccgtcag
agtcagaaggcggagcgtgccgaacaggcccaggaggaggaggaggagaggccgccaggg
gaggaagagcctgccacacctgagggcaaagacacagaggaattgatgcagaagattagg
gaacaagtgctggttcgcagggacaaagtgtaccaggacaacgagggagaagttcgcaag
agatggcactttgaagacgctatcaaacggccctacttccacgtcaagccactagatcgc
ctccagctgcgggcctggcactcctacctggactgggagatcgctcagctcaacaaggac
accaaagactcccaagacggccaacaagatccaaaccaggaagccatacaggggtcagag
gttgctgcccagcctcaggaccaatcagaggatgctgcggttgcccatgatgacctcagg
gttcgcatcctcttcgagcgctgtctgatcgcctgcgctctgtatgaggagttctggatc
aggtacgctcagtacctggagtcgcagagtgtggacgaggcgcgggctgttttcaaacga
gcctgtgagatccacctggcgtacaaacccaacatccacatgcagtgggccacattcgag
gagaggcacggtgacttaaccaaggcccggcgagtgctggaggccctggagaaaactcta
cccgggttggcagtggtccgtcttcgtagggcagctttagagaggcgagcgggccagctg
gaccaatcagaggccttgctgcaagaagcagtggccgaatccaaagaaaagcccacgtta
catgctttttattctattaagctggctcgcctgctgttgaaactgggcaggaaccccagc
agagcccggagagttttacaggaggcactggagattagtccggataacgataagctgcac
ctgaacctgttggagctggaggtatcgggggacccctgggcctcagctgaggcagtgcag
gagtgtgtgacgcgagccctggcagctcccctcgccccacacaccaagatcctcttctca
cagagaggtctgcagttcgcagaggactacagcaactctatccagagtgtgctgtctgtc
tatgaagagcaccagaaactgctgaaggagctgggtggaacaaagagagaagcagagaac
ggggatgaggacccagagaagatgagcaaaagtgaggacggctctgctgttgccgtgtct
gcatcagtcccacctaccatgccacatgtccccatcaccacaccccctcctcctgtgatg
ggcgccgacgcaaatgcacaggctggctacgggggatacagcaactggtatcagcaaccg
cagtacgccggctacggctaccagaacacctggaactacaaccaaggctactatcctccc
agctaa

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