Sander lucioperca (pikeperch): 116053040
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Entry
116053040 CDS
T07345
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03013
Nucleocytoplasmic transport
sluc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116053040
03015 mRNA surveillance pathway
116053040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116053040
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116053040
5.6.2.5 RNA 5'-3' helicase
116053040
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116053040
mRNA cycle factors
Common to processing body (P body) and stress granule
116053040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
116053040
NCBI-ProteinID:
XP_031159765
Ensembl:
ENSSLUG00000013934
LinkDB
All DBs
Position
11:complement(13135735..13153840)
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLHNGGVDDPVAKPSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSNAMYDAREALIPGSAYDRSSAGRPSNMYFQTHDQIGMIGAGPGHMAM
NIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRIRGSAHQGASQGNGPNS
QASQDGASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQF
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaggaa
gcagagttgctcggagcggacacccagggctctgagtacgacttcaccgacttcaccctt
cccagccagacgcaaactcaaggccagacgcagagccagctggacagccaggtaaatggt
cctgatgaaggtcttcacaacggtggagtggatgaccccgtggccaaacccagccagctg
ttggccgagctcaactttgaggaggatgaagaagacacgtactacaccaaagacctgcct
gtgcacgcatgcagctactgtggaatccatgatccagcgtgtgtggtgtactgcaatacc
agcaagaagtggttctgtaatgggcgtggcaacacatctggcagtcacattgtgaaccac
ttggtaagagccaaatgcaaagaggtgacgctgcataaagatgggccgctgggcgagacg
gtgctcgagtgttacaactgcggctgtcgcaacgtcttcctcctgggcttcatcccagcc
aaggccgattccgtggtggtgctactctgcaggcagccctgtgccagccagagtagcctg
aaggacatcaactgggacagctcgcagtggcaaccactgatccaggatcgctgctttctg
tcctggctggtgaaaatcccatcggagcaggagcagcttcgggctcgtcagatcaccgcc
cagcagatcaacaagttggaggagctctggaaggacaaccccactgccaccttggaagac
ctggagaaacctggagtggacgaggagccccagcatgtgctgctacgctacgaggacgcc
taccagtaccaaaacatctttggccctttggtcaaactggaggctgactacgacaagaag
cttaaggagtcccagacccaagacaatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcactctgcccaagacggattcaggtgatatgcggctgatgcaa
ggtgacgagatctgcttgaggtacaagggagacctggccccgctgtggaaaggcattggt
catgtcatcaaagtccctgacaactatggggatgaaattgctattgagttgcggagcagt
gttggagcacctgttgaaatcccccataacttccaggtggactttgtgtggaagtccacg
tcctttgacaggatgcagagcgccctgaagacgtttgcagtggacgagacctccgtgtct
ggttacatttaccacaaactgctgggccacgaggtagaggatgtcaccatcaagtgccag
ctgccaaagcgcttcactgcccagggcctgcccgacctcaatcactcacaggtgtatgct
gtgaagacggtgctgcagaggcctctcagtctgatccagggtcctcctggcactgggaag
actgtcacctctgccaccatcgtctaccacctgtcccgacaaggcaacggaccagttctg
gtgtgtgcgcccagtaacattgccgtggatcagttgactgagaagattgacaagacagga
ctgaaggttgtcaggctttgtgccaaaagccgtgaggccatcgagtcaccagtgtccttc
ttggctctgcacaaccagatcagcaacatggacagtatgccggagcttcagaaactacag
cagctgaaggatgagaccggtgagctgtcgtctgctgatgagaaacgctacagggctttg
aaacgcacagctgagagggagctgctcatgaatgctgacgttatctgttgtacctgcgtc
ggggctggagaccctcgtctggccaagatgcagttccgctccatcctgattgatgagagc
acccaggccacagagccagagtgcatggtgcccgtggtgcttggagccaagcagctcatt
ctggtgggtgatcactgccagctgggtcctgtggtgatgtgtaagaaagcagctaaagca
ggtctgtcccagtccctgtttgaacgcttggtggttctggggatacggccaattcgcctg
caggttcagtaccgcatgcacccggctctcagcgccttcccctccaacatcttctatgag
ggctccctgcagaatggtgtcactgcagctgaccgcatcaagaaagggtttgacttccag
tggccacagccggacaagcccatgttcttctacgtgactcagggtcaggaggagattgcc
agctctggaacctcctaccttaataggacggaggcttccaacgtagagaagatcaccacc
aggctgctgaaggctggagccaaacctgaccagatcggcatcatcaccccatacgaggga
cagcgctcctacctagtccagtacatgcagtttagcggctccctgcacaccaaactctat
cagcaagtggaaatagccagcgtggacgccttccagggcagagagaaggacttcatcatc
ctgtcttgtgttcgtgccaatgagcaccagggcattggcttcctgaatgacccacgtcgt
ctcaacgtggcgctgaccagagccaagtatggcgtgattatcgtgggaaaccccaaggcc
ctctccaagcagccgctgtggaacaacctgctgaacaactacaaggagcaaaaggtcctc
gtggagggacccctcaacaacctgagggagagcctcatgcagttcagcaagccacgcaaa
ctggtcaacaccatcaaccctgggggacgttttatgagcaatgcgatgtacgatgcccgt
gaggccctcatccctggctctgcctatgaccgcagcagtgccggacgtccgtccaacatg
tactttcaaactcacgaccagattgggatgattggggcaggccccggtcacatggctatg
aatattcccatacccttcaacttggtgatgccaccaatgcctccgcccagttacctgggt
cagaccaacggccctgctgcaggtcgtggagctatgaagggtaagcctgggcgtggcggg
cggcagaggatccgtggatcagcacaccagggtgccagtcagggtaacggaccaaacagc
caggccagccaggatggggcctcccagcccttctcccaggggccgctgacacaaggctac
atatccatgagccagccctctcagatgagccagcctggcctctcccagccagagctgtcc
caggacagctacctgggcgatgagttcaagtcccaaatcgatgtggctctgtcccaggac
tcgacttaccagggtgaacgtgcataccaacatggtggggtgactggactgtcacaattc
taa
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