KEGG   Sander lucioperca (pikeperch): 116053068
Entry
116053068         CDS       T07345                                 
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
sluc  Sander lucioperca (pikeperch)
Pathway
sluc03018  RNA degradation
sluc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sluc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116053068 (lsm4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116053068 (lsm4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sluc03019]
    116053068 (lsm4)
   03041 Spliceosome [BR:sluc03041]
    116053068 (lsm4)
Messenger RNA biogenesis [BR:sluc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     116053068 (lsm4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     116053068 (lsm4)
Spliceosome [BR:sluc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    116053068 (lsm4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 116053068
NCBI-ProteinID: XP_031159818
Ensembl: ENSSLUG00000014006
UniProt: A0A8C9YX80
LinkDB
Position
11:13162948..13167080
AA seq 147 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGTQQNKQQGKGRGGAGRGLFGGRGRGMTG
PGRGQQQQLQQQQDKKPGKPQGMKNQH
NT seq 444 nt   +upstreamnt  +downstreamnt
atgcttccactatctctgctgaagactgcccagaaccatcctatgctggtggagttgaag
aatggagagacgtacaacggtcacctggtcagctgtgacaactggatgaacatcaacctg
agagaagtcatctgcacctcgagggatggagataagttctggaggatgcctgagtgctac
atcagaggaagcaccatcaaatacctgcgaatccccgacgagatcatcgatatggtgaag
gaggaggtggtgtcgaaggggcgtggacgtggaggcacccagcagaacaaacagcagggc
aaaggaagaggaggagccggccgcggtctgtttggcggtcgcggcagaggaatgactggt
cctggtcggggccagcagcagcagctgcagcagcagcaggataagaaaccgggcaaacca
cagggaatgaagaaccagcactaa

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