Sander lucioperca (pikeperch): 116053201
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Entry
116053201 CDS
T07345
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04137
Mitophagy - animal
sluc04140
Autophagy - animal
sluc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116053201 (hif1al)
04137 Mitophagy - animal
116053201 (hif1al)
04148 Efferocytosis
116053201 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sluc03000
]
116053201 (hif1al)
Transcription factors [BR:
sluc03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
116053201 (hif1al)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
PAS_2
Motif
Other DBs
NCBI-GeneID:
116053201
NCBI-ProteinID:
XP_031160051
Ensembl:
ENSSLUG00000014784
LinkDB
All DBs
Position
5:948229..976773
Genome browser
AA seq
687 aa
AA seq
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MKDKEETVAVKRTGSEQRKLRSRDAARSRRSQETEVFYELASTLPLPRRVCTHLDKSAIM
RVALSFLRMHHLLRPGKNQKEESEEEGEEDDPMDAFYPQALAGFVMVMTEEGDMIYLTEN
VSKYLGITQLELLGQNIYDFIHACDEEELRDLLTPRPGSSKKLLAEQPSERNFFLRMKST
LTSRGRTVNIKSATWKVFHCTGHMRQLAGGSTSPSVGRVMTLLCEPIPHPSSVEFPLDTC
TFLTRHSMDLRFTHCEGRVTELVGYKPEDLIGRSAYEFYHALDSNHVNKSLHTLLSKGQV
STRHYRFLANSGGFVWAETQATVLYSSKMSKPEAIVCLNFILSAVEQPDVVFSVEQIRCG
QLPKAEPNSPALAPENCGTSDFSDSDPDSEHLSSSSQTEDEDLNPSSTAEIFNKLKEKPE
ELLLLAPAAGDGIVPLIGDLVELSFASPPSPVSVPDHPQDLCTPQLRKLLSPIFSPLTPP
LSSSSSSSAASSPDPEPVQSPCKEEKEVTDTSMVEQFFAVWPEDNQPKGETQELEMMDLD
MLAPYISMDDDFQLTVFSSLPEEADKPPSSSSEPSTVTPAVTVSRKRTRNPDEAVLSQLM
IQDKRQKQDPSSIEEELLLSHRFLGSLEETYQSDLFLDSGPGRKNPLLTDRDPILGGIQG
LCDTAALMRDIFTPRPPDLSPPLSPMT
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgaaggataaagaggagaccgtcgcggttaagcggaccggttcggagcagaggaagctg
cggtctcgtgatgcagccagaagtaggcggagtcaggagacggaggtgttttatgagctt
gccagcactctgccgctcccccgtcgagtctgcacccacctggacaaatccgccatcatg
agagtcgccctcagcttcctgcggatgcaccacctcctcagacccggtaagaatcagaaa
gaggagtctgaagaggagggggaggaggacgatccaatggatgctttctatcctcaggcg
ctggcgggcttcgtcatggtgatgaccgaggagggagacatgatctacctgacggaaaac
gtcagcaaatatctcggaatcacgcagctggagctgctgggtcagaatatttatgacttt
attcatgcctgtgatgaggaggagctccgggacctgctgactccacgtccaggttcgagt
aagaaactgttggcagaacagccgagtgagaggaacttcttcctgcgaatgaagagcact
ctgaccagcagggggcgcaccgtcaacatcaagtctgctacctggaaggttttccactgc
accggtcatatgcgtcagttggctggcggctccacgtcaccctctgtaggcagagtgatg
accctgctgtgtgaacccatccctcacccgtccagcgtggagttccccctggacacgtgc
accttcctcacccgccacagcatggacctgcgcttcacacactgcgagggcagggtgacc
gagttggtgggatacaaacctgaagatttgattggccgctcagcctacgagttttatcac
gcactcgactccaatcacgtcaacaagagcctgcacacattgctgtccaaaggtcaggtg
agcaccagacactaccgtttcctggcaaacagcggcgggtttgtctgggccgagactcag
gcgaccgtcctctacagcagcaagatgtcgaagccagaggccatcgtctgcctcaacttc
atactcagtgccgtggagcagccagacgttgttttctctgtggagcagatccgttgtggc
cagctgcctaaagccgaacccaactcaccagcgcttgcaccagagaattgtgggacatct
gacttcagtgactctgaccccgacagtgagcatctcagcagctccagtcagactgaggac
gaagatttgaatcccagcagcactgcagagatcttcaacaaactgaaggagaagccggag
gagcttcttctgttggctcctgccgccggagatggcattgtcccgctgataggagattta
gttgagctgtcgttcgccagtcctcccagtccagtgtcagtgccagaccaccctcaggac
ctgtgcactccacagctgcgaaagctcctctcccccatcttcagccctctcactccacct
ttatcatcatcatcatcatcatcagcagcctcctcacctgatcctgagccagtgcagagc
ccctgtaaggaggagaaagaggtgactgacaccagcatggtggagcagttctttgccgtt
tggccagaagataatcagccgaaaggagaaacacaggagctggagatgatggatctggac
atgttggctccttatatctccatggacgatgacttccagctgaccgtcttcagcagtttg
ccagaggaagcagacaaacctccatcctcttcgtctgaaccctcaactgtcacacctgca
gtcacagtgagcaggaaacggactcgaaacccagatgaggcggtgctgtcccagctgatg
attcaggacaagagacagaaacaagatccttcctcaatcgaagaggaacttctcctcagc
cacagatttctgggctctctggaggaaacctaccaatcagatttgttccttgactcgggt
cctggcagaaaaaatcctcttctcacagacagagaccctattttaggaggcattcaggga
ctctgtgatactgcagctctgatgagggacatatttacacctcgtccaccggacctgtcg
ccgcctctctcacctatgacttga
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