KEGG   Sander lucioperca (pikeperch): 116053419
Entry
116053419         CDS       T07345                                 
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain
  KO
K06237  collagen type IV alpha
Organism
sluc  Sander lucioperca (pikeperch)
Pathway
sluc04510  Focal adhesion
sluc04512  ECM-receptor interaction
sluc04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sluc00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    116053419 (col4a6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    116053419 (col4a6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    116053419 (col4a6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sluc04147]
    116053419 (col4a6)
   00536 Glycosaminoglycan binding proteins [BR:sluc00536]
    116053419 (col4a6)
Exosome [BR:sluc04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   116053419 (col4a6)
Glycosaminoglycan binding proteins [BR:sluc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   116053419 (col4a6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 116053419
NCBI-ProteinID: XP_035849533
LinkDB
Position
17:10664465..10829833
AA seq 1707 aa
MKFLICVIAVALAVGSAHGGVGKSDEPCGGRDCGAGCRCNPEKGSRGRPGALGEVGQSGP
EGPRGGPGPTGPKGEKGHVGLKGPSGPKGDKGPMGVPGFQGNDGVPGHPGQGGSRGPPGL
DGCNGTRGEPGDPGFGTGEPGFPGISGPSGPKGQKGEPRFISNGITSLPGLPGVDGFPGI
RGPDGPPGFPGPSGPEGFSGLPGPPGPPGPMGSRSDGYEGEKGDKGDVGLPGDPGQPLVN
GIVEFVGFPKGDKGMQGEPGPKGFRGFPGNPGPPGLFGYRGELGEKGIPGYPGARGPPGF
NGPPGAPGQQGLVGNPGFPGQKGYIGPKGDQGDQGPPGPPAYVSDLGTLVQGPTGDPGLN
GLPGAPGDQGSQGYPGPPGQPGIVGFGFGTGRPGAPGFPGNSGPKGEKGNPGIQAYGSEG
NPGSPGLPGPPGPPGPQGPTRSTVEPCVIYPDWPKGAPGVPGPPGPRGQPGNRGYDGYRG
DPGACACEGGGKPGLPGLPGAPGANGNPGFAGRKGESGDGGPPGFNGRQGPPGRAGETGF
FGRKGEKGAPYYTDRFGVKGELGATGPRGPTGETGKPGRDGLPGFPGAPGPPGDAGFGTV
GEKGFPGFPGPKGRSGGPGEPGIGYVGLPGFRGETGEPGIPGLPGPPGPPGLKGENSCEG
VNDAGEGTGQSLPCTIPGEEGNPGVPGIPGRPGPKGQPGNPGGLGRPGFDGAKGERGDSG
FGGQPGPQGFPGPRGDPGVPGAPGQSLDGERGKNGAPGRPGAKGQPGEVLGATPGGPGRD
GAPGIPGDKGQPGTPGQPGLPGGDGRFGVPGLKGERGVDGAPGVTGLPGLPGDPDFGIPG
RRGPPGSSGLSGSPGCQGYPGRKGDRGDPGFPGPAGMKGTPGLPGTIGSPGPRGPPGPPG
PGTREGIPGIPGRKGERGLPGLVGFPGVPGRPGSPGFPGGKGLAGGPGRDGRPGGPGFPG
LKGDRGYPGLPGLPGAFVPVKVEKGEPGIPGANGLPGFPGPRGDKGLPGQPGRPGLPGLP
GYAEQSKGQPGDPGFPGRPGAPGFPGAKGEAGIMGFPGMSGPRGDDGVPGLPGNPGEFGR
PGGKGAPGESYGYPGAPGAKGQPGDSGFPGGRGYDGAPGDIGFPGSPGFPGVKGAPGEGG
RPGLMGSPGFPGPKGLSNYPGRRGADGPPGFPGGPGGPGAKGLPGSPGLDGLNGLPGPKG
IPGTPGGSAGGRPGAPGVPGVKGERGVSYPGAPGFPGPKGERGNTGGPGLVGFPGLPGPP
GPTVGSDVPGPLGDPGLPGLDGEYGLRGPPGPPGPPGPGTAQGDRGDSGLPGFPGSPGRK
GESGIPGGAGLPGSPGFKGGRGESGYSGGPGVKGFPGDPGYYGNKGAKGVRGQRGRKGIP
GVVVPPSPPDIGNRFGDVGFPGASGGSGVPGESGQPGMPGRPGPKGRPGPVGKLGRTGSA
GFPGPVGDAGPPGFLGPTGEQGPPGQAGRRGSPGSVGRSFSIGYTLVKHSQNSQVPMCPQ
GMAKLWDGYSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEICYYASRNDKSYW
LSTTAPIPMMPVAEEQIQPYISRCSVCEAPSQPVAVHSQDMTIPTCPPGWRSLWIGYSFL
MHTAAGAEGGGQSLQSPGSCLEDFRATPFIECNGGKGTCHYFANKYSFWLTTVDPRHEFV
YSPAQETLKGGQERSKVSRCQVCSKIL
NT seq 5124 nt   +upstreamnt  +downstreamnt
atgaaattcctgatttgtgtgatagcagtcgccttggccgtgggatctgcgcacggaggt
gtggggaagtctgacgagccgtgtggaggccgggactgcggcgcaggatgccgatgcaac
ccggagaaaggcagcaggggtcgtccaggggctctcggtgaagtcggtcagagcggacca
gaggggccacgtgggggcccagggcctacagggcctaaaggagagaagggccatgttggc
ctgaaaggaccatctggccccaaaggagacaagggacctatgggagtgccagggttccaa
ggaaatgacggagtacctggtcacccgggtcagggtgggagcagaggaccaccaggactg
gatggatgtaatgggaccagaggagaacctggagatcccggcttcgggactggagaacct
ggattccctggaatttctgggcctagcgggccaaagggtcagaaaggagagcctcgattc
atctcaaacggcatcacgagtttaccaggtttaccaggagtggacggttttcctggtatc
agaggtccggatggtccacctggttttcctggtccgagtgggccggagggattctctggt
ctgcctggtcctcccggccccccagggccaatggggagccgtagtgacggatatgaagga
gagaaaggagacaagggcgacgtgggcttgcccggtgaccccggccagccattggtcaat
ggcattgtggagtttgtgggttttcccaaaggagacaaaggaatgcagggtgaacctggc
ccgaagggattcagaggattccctggcaatcctggcccacctggactattcggctatcgt
ggtgaacttggagagaaaggcattcctggataccccggggcaagaggtccccctggtttt
aacgggcctcctggagctccaggacaacagggattagtaggcaatccaggtttccccgga
caaaaaggatacataggacccaagggagaccagggcgaccaaggaccaccgggaccgccg
gcttacgtttctgatctgggcactttagttcaaggaccaacaggtgacccgggtctcaac
ggcctccccggtgcacctggtgatcagggatctcaaggatacccaggaccaccaggccag
ccagggattgttggatttggttttggtacaggtcgtcccggagctccaggtttccccggg
aacagcggcccaaagggagagaaaggaaacccaggcatacaagcatatggctcggaagga
aaccctggctcccctggactccccggcccccccggcccccctggacctcagggcccgact
agatctaccgttgaaccctgcgtcatctatcctgactggcccaaaggtgctcctggagtg
cctgggccacctggacccagaggacagccgggtaacagaggatacgatggctacagaggt
gatcctggcgcctgtgcctgcgaaggaggaggcaaaccagggttgcctgggttacctgga
gccccaggagccaacggcaaccccggctttgctggacgaaagggcgagtctggtgacggc
ggtccaccgggctttaatggccgtcagggacctcctggtcgcgctggtgagactggtttc
ttcgggcggaagggagagaagggggcgccttactacaccgaccgttttggggtgaaagga
gagctcggagctactggacccagaggacctactggggaaactggaaaacctggcagagac
ggactgccgggcttccccggagcccctggacccccaggtgacgctggcttcggcacagtt
ggagagaaaggtttcccagggttcccagggccaaagggtcgttctggtggccccggcgag
cccggcattggctatgtcggcttgcccggctttcgcggagagactggagagcccggtatc
cctgggttgccagggccaccaggtccacccggacttaaaggtgaaaacagctgtgaaggg
gttaatgacgccggagagggaacgggccaatctctaccttgcaccatacctggggaggaa
ggaaaccccggtgtccccggtatacctggacgaccaggtcctaaaggtcaacccggtaac
ccaggaggccttggacgtcccgggtttgatggtgccaaaggagagagaggagactccggt
tttggaggccaacctggaccacaaggtttcccgggacccagaggtgatcctggagttcca
ggtgctcccggacagagtttagacggagaaagggggaagaatggcgcccctgggcgtcct
ggagccaagggccagcctggagaggtactgggagccacaccaggtggcccaggacgggac
ggggcaccaggtattcctggagacaagggccagcccgggacaccaggacaacctggatta
cctggtggtgatggacgtttcggtgttcctgggctgaagggggagcgcggagttgacggt
gctcctggtgttaccggccttcccggacttccaggcgatccggattttggcattccaggt
cggcgtggacctcctggcagtagcggactaagcggatcaccaggctgccaaggttacccc
ggtcgtaagggagatagaggagacccagggttcccagggccggccggaatgaagggaacc
ccaggactgcccggcaccattggatcaccagggcccaggggacccccgggaccgccagga
ccgggaactagagagggaatcccaggaataccaggaaggaagggtgagagaggtttgccc
ggactggtgggtttccctggagtaccaggtcgtcctggaagcccagggtttcctggaggc
aaaggactggctggagggccaggaagagacggacgccccggcggtcccggattccccgga
ctgaaaggtgacagaggataccccggtctccctggcttgcccggtgcttttgttccagta
aaggttgaaaaaggagaaccaggaattcccggagcaaatggtcttcctggcttccccgga
cccagaggtgacaagggtctgccaggtcagcctggtcgtccgggtctgcctggacttcct
ggttacgctgagcagagcaaaggacagccgggagatcctgggttccccgggcgaccagga
gcgccaggcttccccggagcaaagggagaagctggaatcatgggattccccggcatgtct
ggaccaaggggtgatgatggtgtacctggtttacccggcaaccctggagaatttggtcgg
cctggtggcaaaggtgcacctggagaaagttatggttatcctggagctccaggagctaaa
ggccagccaggagattcaggcttcccaggtggccgtggctatgacggcgcccccggtgac
atcggctttccaggaagtccaggtttccctggagtgaagggagctcctggtgagggagga
cggcctggattaatgggctcccctggtttccccgggcccaagggcctgtccaactaccca
ggaaggagaggagcagatgggcctcctggtttccctggaggtcctggaggtcccggagcc
aaaggtttgcctggatcccctggtttggatggacttaatggccttcctggacctaaaggc
atccctggaaccccaggtgggagtgcaggcggtcgcccaggagcccctggtgttccaggg
gtgaagggagagagaggagtctcgtaccccggagctccaggcttcccagggccgaaggga
gagagaggaaatacagggggtcctggacttgtagggttccctggtctgcccggacctcct
ggtccgactgtggggtcggatgtccccggacctttgggagaccccggcctccctggactg
gatggagagtatggtttacgaggtcctccaggtcctcccgggcctcctggtccaggcaca
gcccagggagatagaggtgactctgggctcccgggcttccctggctcccccggcaggaaa
ggagaatccggcattcctggaggcgccggactccccggcagccccggtttcaaaggaggc
cgaggtgagagcggctacagcggaggtcctggtgtcaagggtttccccggtgaccctggt
tactatggaaacaaaggagccaagggagtacgagggcaacgtgggcgtaagggtatccct
ggagtggtggtgcctccatccccaccagacatcgggaatcgcttcggagatgtgggtttt
cccggtgcaagcggtggctccggtgtccccggagaatccggtcagccaggaatgcccgga
cgtccaggtcccaagggtcgtcccggtcccgttggtaaacttggcaggactgggtctgct
ggttttcctggacctgtcggtgacgctggaccccccggtttccttggacccactggagaa
caaggtccccctggtcaggctggtcgccgcggctctcccgggagcgtgggccgcagtttt
agcatcggctacactctagtgaagcacagccagaactcccaggttcccatgtgtcctcag
ggcatggccaagctgtgggacgggtacagtctgctgtacgtggagggacaggagaaggct
cacaaccaggacctcggtcagccagggtcgtgcctccccaggttcagcaccatccccttc
ctctactgctcccccaacgagatctgctactacgcaagccgcaacgacaaatcctactgg
ctctccaccactgcacccatacccatgatgcctgtggccgaggagcagattcaaccttac
atcagcaggtgttctgtgtgtgaggctccctctcagcccgtggcggtccacagtcaggac
atgaccatccccacctgtcctccaggctggaggagtctctggataggatactccttcctc
atgcacacagcagccggcgccgagggcggcggtcagtccctgcagtctcccggctcctgc
ctggaggacttccgcgcgacgccgttcatcgagtgcaacgggggcaagggcacctgccac
tacttcgccaacaagtacagcttctggctcaccaccgtggacccccgccatgagtttgtt
tactcgccagcacaggagaccctgaagggaggccaggagcgctccaaagtcagccgctgc
caagtctgcagcaagatcttgtag

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