Sander lucioperca (pikeperch): 116054209
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Entry
116054209 CDS
T07345
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03082
ATP-dependent chromatin remodeling
sluc03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116054209 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
116054209 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sluc01009
]
116054209 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sluc03021
]
116054209 (smarcb1a)
03036 Chromosome and associated proteins [BR:
sluc03036
]
116054209 (smarcb1a)
Protein phosphatases and associated proteins [BR:
sluc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116054209 (smarcb1a)
Transcription machinery [BR:
sluc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116054209 (smarcb1a)
SWI/SNF complex
116054209 (smarcb1a)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116054209 (smarcb1a)
PBAF complex
116054209 (smarcb1a)
SWI/SNF complex
116054209 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
116054209
NCBI-ProteinID:
XP_031161498
Ensembl:
ENSSLUG00000016035
LinkDB
All DBs
Position
2:complement(38511517..38522728)
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPVKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLASVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENATQSEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
ILEEQTDQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttagcaaaacgtttggacaaaaaccggttaaatttcagctcgaggaggatgga
gacttttacatgattggatcggaggtgggaaactacctccgtatgttcagaggctctctg
tataaaagatacccgtcattatggagaaaactggcttcggtagaagaacggaagaaaata
gtggagtcctcacacgatcacggctacactcagctggccaccagtgtgactctgctgaag
gcttcggaggtcgaggagatcctcgaaggaaacgacgagaagtacaaagctgtctctatc
agcactgagccccctgcctacctcagggagcagaaggcgaagaggaacagtcagtgggtt
cccacgctgcccaacagttctcaccacctggatgcggtgccctgctccaccaccatcaac
cgcagccgactgggccgcgacaagaagaggaccttcccactgtgctttgacgaccacgac
cccgcagtgatccacgagaacgccactcagtctgaagttctggttccgatccgtctggac
atggagattgagggacagaagctcagagacgctttcacctggaatatgaacgagaagctg
atgacgccagagatgttcgctgagatcctttgcgacgacctggacctcaacccgctggcc
ttcgtccctgccatcgcctcagccatccgacagcagatcgagtcttatccgacagacagc
atcctggaggagcagacggaccagagggtcatcatcaagttgaacatccatgttgggaac
atctccctggtggaccagtttgagtgggatatgtctgagagggagaactctccagagaag
tttgccctgaagctttgctctgagctcggcctgggcggagagtttgtcaccaccatcgcc
tacagcatccgcggtcagctgagctggcaccagaggacgtacgccttcagtgagaacccg
ctgcccacagtggagatagccattagaaacacaggtgatgccgaccagtggtgccccctg
ctggagaccctgacagacgcagagatggagaagaagatcagagatcaggacagaaacacg
aggcgaatgaggcgattggcgaacacggcccccgcctggtag
DBGET
integrated database retrieval system
