Sander lucioperca (pikeperch): 116054213
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Entry
116054213 CDS
T07345
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116054213 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116054213 (snrnp200)
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116054213 (snrnp200)
Spliceosome [BR:
sluc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116054213 (snrnp200)
Complex C
U5 SnRNP specific factors
116054213 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Sigma54_activ_2
DUF603
Motif
Other DBs
NCBI-GeneID:
116054213
NCBI-ProteinID:
XP_031161502
Ensembl:
ENSSLUG00000011864
LinkDB
All DBs
Position
2:33698311..33760910
Genome browser
AA seq
2134 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKSQRTK
PQKLEERRDKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKDLQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEHSDEDSEGEEAGVGCAL
SANLGATGDVMTVKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKERITGKMESDQELSKIL
YQLQETEKEDIIREERSRRERLRKSRADDAMDTDHGESMAPRQLLDLDDLAFTQGSHFMA
NKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVPIEKLPKYAQAGFEGFKTLNRI
QSKLYKTTLETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINVDDFKIIYIAPM
RSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGERT
YTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDVATC
LRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVF
VHSRKETGKTARAVRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAI
HHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTEL
GALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDMLNAE
IVLGNVQNVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRTDLVHTAANVL
DKNNLVKYDKRSGSFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLSSEF
RNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMVYV
TQSAGRLMRAIFEIVLNRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFKKLPEEVIKKIE
KKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVELTV
TPDFQWDDKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPLPP
QYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQNK
FPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPMEA
LAEQVFVDWHQKFQDILNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQRKN
VQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWL
GCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVVFVP
SRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLVPFLEKINDSTLKETLANGVGYLHEGL
SATERRIVEQLFNSGAVQVVVSSRSLCWGINISAHLVIVMDTQYYNGKIHAYVDYPIYDV
LQMVGKANRPMLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVTKT
VENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVEHTLHDLEQSKCISI
EDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYNNIPIRHHE
DQLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEDILSKAVRLIQ
ACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPFFTSEHIKRCTDKGVESIFD
IMEMEDEERTALLQLSDAQMADVARFCNRYPNIELSYEVAEKDNLKSGSPVLVQVQLERE
EEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAMGVHNY
TLYFMSDAYMGCDQEYKFSADVKEADSDGDSDSD
NT seq
6405 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcgcgtagcttacagtacgagtacaaagcgaactctaacttggtg
ttacaagcggatcgctctctgattgaccgcacgcggcgagatgagcccaccggagaggtt
ctgtccctcgtggggaaactggaggggaccaagatgggggacaagtcccagaggaccaaa
cctcagaagctggaggagagacgagacaagaggcgaaagagagacgaggacagacacgac
atcaacaagatgaagggctacacccttctgtctgaaggcatagacgagatggtgggcatc
gtgtacaagcccaaaaccaaggagaccagagagacgtatgaggtgctgctgagcttcatc
cacgccgctctgggagatcagccgcgtgatattctgtgcggagcggccgatgaagtttta
gcggtgctgaagaacgataaaatgagggacaaggaacggcggcgtgaagtagagcagctt
ctggggccggccgatgacacccgctaccacgtgttggttaatttgggcaaaaagatctcc
gactacggaggggacaaggacctgcagaatatggatgacaacatcgatgaaacgtacggc
gtgaacgtccagtttgagtctgatgaggaggagggggatgaagaccagtttggagaagtc
cgagacgagcactcggatgaagacagcgaaggagaggaggccggtgtgggctgcgctctt
tcagccaacctcggggccacaggcgacgtgatgaccgtgaagaaaaaggacctccatcct
cgagacatcgacgccttctggctccagcgtcagctcagccgtttctatgacgatgccatc
gtttcccaaaagaaagctgacgaagtcctagaaatcctcaagacggccagcgacgaccga
gagtgtgagaaccagctggtgttgctgctgggcttcaacaccttcgatttcatcaaaatc
ctccgtcagcatcgccgcatgatccagtattgtaccatgctggcgagcgctcagagcgag
gcggagaaggagcgcatcacaggaaagatggagtctgatcaggaactgtcaaagattctc
taccagctgcaagagacggagaaggaggatatcatcagggaggagcgatctcgccgggag
aggttgaggaagtctcgtgctgatgacgcgatggacaccgaccacggagagtcgatggcc
cccagacagctactagacctcgacgacctggccttcacgcaggggagccacttcatggcc
aacaagcgttgccagctgccggacggctcatttcgcaaacagcgcaaaggttacgaagaa
gtccacgtgcctgccctcaaacccaagccctttgctgacgatgaggtgctcgttcccatc
gagaagctgccgaagtatgcgcaggctggatttgaagggttcaaaaccctgaaccgcatc
cagagcaaactgtacaagacgacgctggagacggacgagaacctgctcgtgtgtgcgcct
acgggagccggtaagaccaacgtggctctgatggcgatgctgagagagatcggaaagcac
ataaacctggacggaaccatcaacgtggacgacttcaaaatcatctacattgctccgatg
cgttcactggtacaggagatggtgggaagtttcagcaagcgcttggccagttacggcatc
acggtgtctgagctgacgggagaccaccagctctgtaaagaggagatcaacgccactcaa
atcatcgtctgcacccccgagaaatgggacatcatcacccggaaaggcggagagagaacc
tacacccagctagtgcgcctcatcatcattgatgaaatccaccttctccacgacgaccgt
ggcccggtgttggagtctctggtggcgaggacgatccgtaacgtggagctgacccaggag
gatgtgcgtctgctcggcctcagcgccacgctgcccaactacgaggacgtggccacctgc
ctgcgcgtggaccctgcaaagggactcttctacttcgacaacagtttccgccccgtgcct
ctggagcagacttacgtcggcatcacagagaaaaaggccatcaagcgtttccagattatg
aatgagatcgtttatgaaaagatcatggagcatgctgggaagaaccaggtgctagttttc
gtccactccaggaaggagacgggaaaaaccgcccgggccgtgagggacatgtgtttggag
aaggacacgctgggtcttttcctcagagaggggtcggcttccactgaagtcttgagaact
gaggcggagcagtgcaagaacctggaactgaaggatctgctgccctacggctttgcgatc
caccacgccggaatgaccagagtggaccgtacgctggtggaggatctgttcgccgatcga
cacatccaggtcctggtgtccacggccacgctggcctggggagtcaacctgccggcacac
accgtcatcatcaaaggtactcaggtgtacagccctgagaaaggccggtggaccgaactc
ggagccctggacattctgcagatgcttggtcgagccggccgtcctcagtacgacaccaag
ggagagggaatcctgatcacgtctcacggagagctgcagtactacctgtctctgctcaac
cagcagctgcccatagagagccagatggtggcgaagctgcctgacatgctcaacgccgag
atagtactgggcaacgtgcagaacgtgaaggacgccgtgaactggctcggctacacctac
ctgtatgtgcgcatgctccgcaaccccaccctgtacggcgtctcccacgacgacaggagc
tcagacccgctgctggagagacgcaggacggacctggtgcacacggcggccaacgtcctg
gacaagaacaacctcgtcaaatacgacaagaggtccggcagcttccaggtgaccgacctg
ggacgcattgcgagtcacttctacatcacccacgactccatccagacgtacaaccagctg
ctgaagccgacgctcagcgagatcgagctcttcagagtcttttcactctcctcagagttc
aggaacatcaccgtgagagaggaggagaagctggaacttcagaagctgctggaaagagtt
cccattcctgtgaaggaaagcatcgaggaacccagtgctaagataaacgtgctgctgcag
gcgtacatctctcagctcaaactggaaggcttcgctctcatggccgacatggtgtacgtc
acacagagtgctggaagattgatgcgggcgatatttgagatcgttctcaacagaggctgg
gctcagctgacggacaagaccatgaatctttgcaagatgatcgacaagagaatgtggcag
tcgatgtctccgctgcgacagttcaagaagcttccagaggaagtcatcaagaagatcgag
aagaagaacttccccttcgagcgtctctacgacctcaaccacaatgagatcggtgagctg
atccgaatgccaaaaatggggaagaccatccacaaatacgtccaccagttccccaaactg
gacctggctgtccacctgcagccaatcacccgctccacgctgaaagtggagctcaccgtc
acgccggacttccagtgggatgacaagattcacggatcctctgaggctttctggatcctg
gttgaggatgtggacagcgaggtcatcctccaccacgagtacttcctgctcaaagccaag
tacgcccaggacgaacaccttgtgacgttctttgtgccggtgttcgagcctctgccgccg
cagtacttcatccgcgtggtctcggaccgatggctctcgtgtgagactcagctcccggta
tccttccgtcacctgatcctaccggagaagtacccgccaccgacggagctgctggacctg
cagcctctgcccgtcactgctctcagaaactcagccttcgaggcgctctaccagaacaaa
ttccccttcttcaaccccattcagacacaagtgttcaacgctgtgtacaacagcgacgat
aacgtgtttgtgggcgctcccaccggcagtggaaagaccatctgtgcggagtttgctatt
ctgaggatgctgctgcacaacgccgaaggtcgctgcgtctacatcaccccgatggaagct
ctggccgagcaggtgtttgtcgactggcaccagaagttccaggacatcctgaacaaaaag
gtggtgctgctgacgggagaaaccagcaccgatctgaagctcctggggaaaggggacatt
atcgtcagcacccccgacaaatgggacatcctgtctcggcgctggaaacagaggaagaac
gtccagaatgtcagcctcttcatcgtggacgagactcacctgatcggaggagagaacgga
cctgtgttggaagtgatctgctccaggatgaggtacatctcctctcagatcgagcgtccc
atccgcatcgtggcgctcagctcgtctctgtccaacgccaaagacgtggcccactggctc
ggctgcagcaccacggccacgttcaacttccaccccaacgtcagaccggttcctctggag
ctgcacatccagggcttcaacgtgagtcacactcagactcgcctgctgtccatggcgaag
cccgtttaccacgccatcatgaagcactctccctccaagccggccgtggtgttcgtcccg
tcccgcagacagactcgcctcacggccatcgacatcctcaccttctgcgctgcggacgtg
gttcctcagaggttcttgcattgcaccgagaaggacctcgttcccttcctggagaaaata
aacgactcgactctgaaagagactctggccaacggcgtcggctacctgcacgagggcctg
tctgcaaccgagcgccgaatagtggagcagctcttcaactccggtgctgttcaggtggtg
gtttcttctcggtcgctctgctggggcatcaacatctccgcacacctcgtcatcgtcatg
gacacccagtactacaacggcaaaatccacgcatatgtggactatccgatctacgacgtc
ctgcagatggtgggcaaagcgaacagacccatgctggacgacgagggacgctgtgtcatc
atgtgtcagggctccaagaaggacttcttcaagaagttcctgtacgagccgctgccagtg
gagtctcacctggaccactgcctccacgaccacttcaacgccgagatcgtcaccaagacg
gtggagaacaagcaggacgccgtggactacctgacgtggacgttcctctaccgccgcatg
acccagaaccccaactactacaacctgcaaggcatgtcccaccgccacctgtcggaccac
ctgtcggagctggtggagcacacgctgcacgacctggagcagtccaagtgcatcagcatc
gaggacgagatggacgtcgcgccgctcaacctgggcatgatcgctgcctactactacatc
aactacaccaccatcgagttgttcagcatgtccctgaacgccaagacaaagatccgtgga
ttaatcgagatcatctccaacgctgccgagtacaacaacattcccatcaggcaccacgag
gaccaactcctccgacagttggcgcagaaagtaccgcacaaactgaacaacccgaagttc
aacgacccgcacgtgaagaccaacctgctgctgcaggcgcacctctcccgcatgcagctg
agcgccgagctgcagtcggacacagaggacatcctcagcaaggcggtgcggctgatccag
gcctgcgtggacgtgctgtccagtaacggttggctgagtccggctctggcagcgatggag
ctggctcagatggttacccaggcgatgtggtccaaggactcgtacctcaaacagctgccc
ttcttcacctccgagcacatcaagcgctgcacagataagggcgtggagagcatcttcgac
atcatggagatggaggatgaagagcgaacggctctgctgcagctgtccgacgcccagatg
gccgacgtcgctcgcttctgtaaccgctaccccaacatcgagctgtcgtacgaagtcgcc
gagaaggacaacctcaagagcggcagtccagttctggttcaggttcagctggagagagag
gaggaagtgaccgggcccgtcatcgcaccgctcttcccccagaaacgtgaggagggctgg
tgggtggtgatcggagaccccaaatctaacagcctgatctccatcaagaggctgacgctg
cagcagaaagccaaggtcaaattggactttgttgccccggcgatgggcgtccataactac
acactgtacttcatgagcgacgcgtacatgggctgcgaccaggagtacaagttcagtgcg
gacgtgaaggaggcggacagcgacggagacagcgactcggactag
DBGET
integrated database retrieval system
