Sander lucioperca (pikeperch): 116054244
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Entry
116054244 CDS
T07345
Symbol
cltcl1
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04142
Lysosome
sluc04144
Endocytosis
sluc05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
116054244 (cltcl1)
04142 Lysosome
116054244 (cltcl1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
116054244 (cltcl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sluc04131
]
116054244 (cltcl1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sluc04147
]
116054244 (cltcl1)
Membrane trafficking [BR:
sluc04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
116054244 (cltcl1)
Exosome [BR:
sluc04147
]
Exosomal proteins
Proteins found in most exosomes
116054244 (cltcl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
LVIVD
capSnatchArena
Gp18_dom_I
Motif
Other DBs
NCBI-GeneID:
116054244
NCBI-ProteinID:
XP_031161556
Ensembl:
ENSSLUG00000004507
LinkDB
All DBs
Position
2:complement(6337521..6368172)
Genome browser
AA seq
1685 aa
AA seq
DB search
MAQILPIRFQEHLQLQNMGVNPANIGFSYLTLESDKFICIREKVGDQNQVVIVDMSDPTN
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKVKAHTMTEEVMFWKWISVNTV
ALVTDTAVFHWSMEGDSQPNKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAAFGEFKVEGNAKPSTLFCFAVRSQAGGKLHIIEVGQPAAG
NQPFAKKAVDVFFPPEAQTDFPVAMQIGNKHGVIYLITKYGYIHLYDLESGVCIYMNRIS
AETIFVTAPHEATSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLALRMAVRSNLAG
AEEIFARKFNTLFAQGSYSESAKIAASAPKGILRTAETIRKFQSVPAQPGQASPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKASDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWVFLLRNVMRVSPDQGLQFAQMLVQD
EEPLANINQIVDVFMEGNLIQQCTSFLLDALKNNRPAEGHLHTRLLEMNLIHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQLCVQIASKYHEQLGTEALVELFESFKSYEGLFYFLGSIV
NFSQEPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQ
FSTDELVEEVEKRNRLKLLLPWLESRIHDGCEEPATHNALAKIYIDSNNTPERFLKENTF
YDSAVVGKYCEKRDPHLACVAYERGQCDLELIKVCNENSLFKSEARYLVRRKDPELWANV
LEENNPFRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINKLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAIQVLIEHIGNLDRAYEFAERCNEPAVWSQLARAQLQRDLVKEAIDSYIKAVDPSAYME
VVNAASKNNNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFVSGPNNAHIQ
QVGDRCYDEGMYEAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCFA
CVDGEEFRLAQICGLHIVIHADELEDLISYYQDRGYYEELIALLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQSHLWAELVFLYDKYEEFDNAAITMM
SHPTDAWKEGLFKDIIAKVANVELYYKCLSFYLEYKPLFLNDLLTILSPRLDHSRAVTFF
SKVNQLKLIKPYLRSVQNHNNKSVNEALNNLLTEEEDYQGLRASIDAYDNFDTIGLAQRL
EKHELIEFRRIAAYLYKGNNRWRQSVELCKKDKLYKDAMLYVAESKDAELAETLLQWFLE
EGRKECFAACLFASYDLLHPDVVLELAWRHNIMDFAMPYFIQVMREYLTKVDEFAAKVTV
DKLEEADSQRKTEEDVTEPQPIVFGQQLMLPASPAPVAPQPAYPGYGYPAAPVGFPAQPA
YGFNM
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatactgccgatacgatttcaggaacatctgcagttgcagaacatgggcgtg
aacccagccaacattgggttcagctatctgaccctggagtcggacaagttcatctgcatc
agagagaaggtgggcgatcagaaccaggtggtgatcgtggatatgtccgaccccactaac
ccaatcaggagaccaatctctgccgacagtgccatcatgaatcccgccagcaaggtcatt
gccctgaaagacgctgccaagacgctgcagatcttcaacattgagatgaagagtaaggtg
aaggctcacactatgacagaggaggtcatgttctggaagtggatatcggtaaacactgtt
gccttggtgacggatacggctgtctttcactggagcatggagggggattcccaacccaac
aaagtgtttgatcggcacgctagtctggcgggatgtcagatcatcaactacagaactgac
gaacaacagaagtggctactgctgatagggatttctgcacagcaaaaccgtgtggttggg
gcgatgcagctgtattctgttgacaggaaagtgtcccagcccattgagggccacgccgct
gccttcggggagttcaaagtggagggaaatgccaaaccctccacccttttctgctttgct
gtgcgctcacaggctgggggaaagttgcacattattgaagttggtcagccagctgcagga
aaccagccatttgctaagaaagcagtggatgtgttcttccctccagaggctcagacagac
tttcctgtagctatgcagattggtaataagcacggtgtaatatatttgatcacaaagtac
gggtacattcacctgtatgacctggagtctggagtgtgcatctacatgaaccgaatcagt
gcagagaccatctttgtaaccgcccctcatgaagccacctctggaattattggggtcaac
aagaagggacaggtgttgtcagtgtgtgttgaggaggaaaacattgtcaactatgccacc
aacgtcctgcagaaccctgatctagccttgaggatggctgtgaggtccaaccttgctggg
gctgaggagatttttgccaggaagttcaacactctgtttgcccagggaagttattcagaa
tctgcaaagattgctgcatcagcacccaagggtatcctacggacggcagaaaccatccgt
aagtttcagagtgtcccggcccagccaggtcaggcctcgccactgttgcagtactttggt
attctgctggaccagggccagcttaacaagtttgagtctctggagctgtgcaggccagtc
ctgcagcagggccgcaagcaactactggagaaatggctgaaggaggacaagctggagtgc
tcagaggagctgggagacctggtgaaggcctctgaccccaccctcgctcttagtgtgtac
ctcagagctaacgtgcccaacaaggtcatccagtgcttcgctgagacgggccagttccaa
aagatagtgctgtatgctaaaaaggttggctacaccccagactgggtgtttttgctgaga
aatgtaatgcgtgtcagtccagaccagggactgcagtttgcccagatgctggtccaggat
gaagagccgctggccaacatcaaccagattgtagatgtattcatggagggcaacctgatc
cagcagtgcacctccttcctgttggatgctctaaagaacaaccgcccagccgaaggacac
ttacatacacgtctgcttgagatgaacctcatacatgccccccaggtagcagatgcaatc
ctggggaaccagatgtttacgcactatgaccgtgcccacgttgctcagctgtgtgagaag
gcaggtctgctgcagagggctcttgaacactacaccgacctgtatgatatcaaacgagcc
gtggtgcacacacatctgctcaaccctgagtggctggtgaacttcttcggctctttatca
gtagaagactcgttggagtgtttaagggccatgttgtcggctaacatcaggcagaacctg
cagctgtgtgtccagatagcatctaagtatcatgagcagctggggactgaggcattagtg
gagctctttgaatccttcaagagttatgagggtttgttttacttccttgggtcgattgtg
aatttcagccaggagcctgacgttcactttaagtacatccaggctgcctgcaaaacaggc
cagatcaaagaagtggagagaatctgtagagagagcaactgctacgacccagagagggtt
aaaaacttcctcaaggaggccaagctgacagaccagcttcctctcatcattgtgtgtgat
cgctttgactttgtccacgacctggtgctctacctctaccgcaacagtctacagaaatac
attgaaatctacgtacagaaagtgaaccccagtcgtttaccggtggtgataggcggtctg
ttggatgtcgactgtgctgaggatgtcattaaaaacctgatcatggtggtcagagggcag
ttttctactgatgagctggtggaggaggtagagaagaggaacaggttaaaacttctattg
ccatggctggagtcccgtatccacgatggatgtgaggagccggctacccacaatgccctg
gcaaagatctacattgacagcaacaacacacccgaacgcttcctgaaggagaacacgttc
tacgatagcgccgtggtcggaaaatactgcgagaagagagacccccacctggcctgtgtg
gcttatgagagaggacagtgtgacctggagctcatcaaagtgtgcaatgagaactcttta
ttcaagagtgaggctcgatatcttgtgcgacggaaagatccagagctttgggcgaatgtg
ttagaagaaaacaaccccttcagaagacaactcatcgaccaggtggtgcagacagcactg
tcagagacccaggacccagaggaggtgtcagtcacagtcaaggccttcatgactgcggac
ctgcccaacgagctgatcgaactgctggagaagattgtacttgataactctgtcttcagt
gaacacagaaacctccagaacctgctgattttgacggccatcaaggccgaccgtactcgt
gtgatggagtacattaacaagctagacaactacgacgctccagacattgctaatattgcc
atcagcaatgagctctttgaagaagcgtttgccattttcaagaagtttgatgtcaacacc
tcagccatacaggtattgatagagcacatagggaacttagatcgtgcctatgagtttgct
gagcgctgtaatgagcctgcggtgtggagccagttagccagagctcagctacaaagagac
ctggtcaaggaggccattgactcgtatatcaaagccgttgacccttcagcgtacatggag
gtggtcaacgcagccagcaagaacaataactgggaagacttggttaaattccttcagatg
gctcgaaagaaagcgagagagtcttacgtggagacagagctgatctttgctttagctaaa
acgaaccgtctggcggagctggaagagtttgtcagtgggcccaacaatgctcacatacag
caggtgggcgatagatgttatgatgagggaatgtatgaagcagccaagctcttgtacaac
aatgtgtccaactttgctcgcctcgcatccacactagtccacctcggagagtaccaggca
gctgtggacagtgcgaggaaagccaacagcacacgtacatggaaggaggtgtgttttgca
tgtgtggatggcgaggagtttcggctggcacaaatctgcggccttcacatagtgatccac
gctgacgagctggaggacctgatcagctactatcaggaccgcgggtactatgaggaactc
attgctctgctggaggctgcgctgggtctggagagggcccacatgggcatgttcaccgag
ctcgccatcctctactcaaagttcaagcctcagaagatgagggagcacctggagctcttc
tggtccagagtcaacatcccaaaggttcttcgtgcagcagagcagtctcatctgtgggca
gagctggttttcctctatgataaatatgaggagtttgacaacgctgccatcacaatgatg
tctcatccgacagatgcttggaaagaagggctgttcaaggacattattgccaaggttgcc
aatgtggagttgtactataaatgtctttccttctacctggaatacaaacccctctttctg
aatgacctgttgaccattctgtctccgcggttggaccacagccgagctgtcacatttttc
agcaaggtgaaccagctgaagttgatcaagccttacctgaggtctgtccagaatcacaac
aacaagtccgtcaatgaagccctcaacaacctgctgacagaggaggaagactaccagggc
ctgagagcatccatcgatgcctatgacaactttgataccattggcctggcgcagaggtta
gagaaacatgaactgattgagttcaggcgtattgctgcctacctgtacaagggcaacaac
cgctggagacagagtgtagagctctgcaagaaggacaaactctacaaggatgcaatgctg
tatgtcgcagaatctaaggatgcagagctggcagagactctgctccagtggttcctggag
gagggcaggaaggagtgcttcgctgcctgcctgttcgcctcctatgacctgctgcaccct
gacgtggtgctggagctggcctggaggcacaacatcatggactttgccatgccatacttc
atccaggtcatgagagagtacctgacaaaggttgatgagtttgcagcgaaggtgacggtg
gacaaactggaggaggcagacagccaaaggaaaactgaagaggatgtgacagagcctcag
ccgatagtgtttggccagcagctgatgttgcctgcctctcctgctccagtggctccccag
ccagcttacccaggctatggctaccccgccgcccctgtgggcttccccgctcagcccgct
tatggcttcaacatgtag
DBGET
integrated database retrieval system
