Sander lucioperca (pikeperch): 116054318
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Entry
116054318 CDS
T07345
Symbol
zgc:152968
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116054318 (zgc:152968)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sluc03009
]
116054318 (zgc:152968)
Ribosome biogenesis [BR:
sluc03009
]
Eukaryotic type
Pre-60S particles
RNases
116054318 (zgc:152968)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Zwint
KIX_2
THOC7
Chal_sti_synt_N
Imm44
Motif
Other DBs
NCBI-GeneID:
116054318
NCBI-ProteinID:
XP_031161686
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Position
2:complement(3997750..4008116)
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AA seq
1202 aa
AA seq
DB search
MFPSSGLFAYINCPFSKRGHCERPHCLYKHATELRDTFGASYKSSLVVAGLQNVYPVNDE
TREDGLQELERINKEIETVRNEVEQEQRRLSRYQTVQADSINTMPNFSVSKSETADKHVD
IGSYGLSSCTDITTTYSRARKYVVDNSKPRTDLEYDPLSNFSAGLRSYSSSGKEQKVRNG
PGLKRANNTVPCDQKKPVTCQSPLPRLPSPEPFDDSNEDCVLIIDIPLSPDKKRARVQKP
LRSVGGKSLQDNVEESKEVQTPISLLNAEVCKVTYPPASTIEGNRVYSNCGAENNQGPLN
LYENKECENISVDGRVVDLTGCLEELQSESQKMTPFQAAETLLEKSASPPATTDLQDQNW
NNLVGEKEEHVFQVELPQCALPHSVKKMNPLQSHHFPPTNSLFYKAPVANSDLPCRQHTK
QAQTAEQPAQSRVSNQRSSTKCVPSVLPHSQKMSSKMPGQMQAKAAAPESYLELAEPTSD
SSQARHDSASSLANRAELSSGSTEPLFGTEDEVITICSSSDDEDELNYSEMELSDSDPME
ECYRIFMEANNEDKGNDKQPEVSVGAMDVEKPNVKPQALPLKKRVAHEAKHTEQPVANRR
PQPQVLVPLRVPAVSGFASQPSITPKIQQVRQGASMLTASVKGGQAFVSSTCQWKPETQM
APFPLTQTPENLQPAPVQNAYMNYVSLGTAVIGVGNNLHLILPEGTFPLPVTSGSSQVTS
VLTPLSQVYTSTAAVRQMYHPPAVTPVQRYRTTAPVLIPAPARKPSLNSAFSSAHSSPAV
STTPLAAVHSTVKPVPTKRKLKQQCEATKDKVPHDIRQRYVNMFTEEFLKTTANVNEAFE
KALAEEKAVYNRSVNKLKYLSVAVNALKKLKNQSAVADKDENAVNSQRSKGNIPLNMKNF
RENADMAFYESLKDYILTEERLVESNYPVQHPEKPGWAVLFADNKKGSADPLKRICCRCG
ATYSVNHMGKHIRKEECNYHYGKGVTKKVPGGVETRYSCCEGVMGAPGCQVFKLHVHDSL
SLDGFVSTTPRHPSDKNCPGVYSLNCEMCYTIHGLELSRVTVVNSSLHVVYDTFVRPDNE
AIDYNTRFSGITEEDVKGKCTSLTEVQETLLSFISADTILIGHGLEMDLCALKLLHGVVV
DTSVVFPHRLGLPHKLTLNNLTAEYLRRIIQESVCGHDTAEDAAACMELMLWKVKEDGKL
KK
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgtttccctcgtctggtctctttgcttatataaattgtcccttttcaaaacgtgggcat
tgtgagcggcctcactgtttgtacaaacatgccacagaattgcgggatacgtttggtgcc
tcgtataaatcatcgctagttgttgcaggactgcaaaatgtctatccagtgaatgatgag
accagagaagacggcctccaggagctggagcggatcaacaaggagattgaaactgtaagg
aatgaggtggagcaggagcaaagacgactgtcacgctaccagaccgtacaggcagacagc
ataaacactatgcctaatttctctgtttccaagtctgagactgcagataaacacgtagac
ataggttcttatgggctgtcttcgtgcacagacataactacaacatactcccgagcaagg
aagtacgtggttgacaactcaaaaccaaggactgacttggagtatgaccctctgtccaac
ttttctgctggcttacggtcttatagctcatcaggtaaagagcaaaaagtgagaaacgga
ccgggtttgaaaagagcaaataacactgtaccttgtgaccaaaagaagccagtcacatgt
cagtctccgcttcccagattgccatctccagagccatttgatgactccaatgaagactgc
gtcctgattattgacattcctctctcgcctgacaaaaagagggcgagagttcagaaacct
cttcgttctgttggtggcaaatccctccaggataatgtggaggaatcgaaggaggtccaa
acacctatttcacttctaaatgctgaagtgtgcaaggtaacatatccacctgcatcaacg
atagaaggcaatagagtttatagtaattgcggtgctgaaaacaatcaaggtccattaaat
ctttatgagaacaaagaatgtgaaaatatatcggttgatgggagagtagttgatttaact
ggctgtttagaagaattgcaaagtgaaagtcagaaaatgactccctttcaggctgctgaa
acattgttggagaaatctgcaagtcctcctgccaccacagacctgcaagatcaaaactgg
aacaatctggtgggggaaaaggaagaacatgtgtttcaggtggaattgcctcagtgtgcg
ctgccccatagtgttaagaaaatgaatccactgcagtcgcatcattttccaccaacaaat
tcacttttttataaagctccagttgctaactcagacttaccatgcagacaacacaccaag
caagctcagacagcagagcagccagctcagagcagagttagtaatcagcggtcttccaca
aaatgtgtaccatcagtgctgccacacagccaaaaaatgtcaagcaaaatgccaggacag
atgcaggctaaagctgccgcacctgaaagctacctggagctagcagaaccaacttcagac
agcagccaggctcggcacgattcagcatcaagtttggccaacagagctgaattatcatcc
ggatcaactgaaccgctttttgggacagaagatgaggttataaccatttgttccagctct
gatgatgaagatgagctcaactattcagaaatggaactgtctgacagtgacccaatggag
gaatgctacaggatcttcatggaggctaacaatgaggataagggaaatgataagcagcct
gaagtgtccgttggagctatggatgtagagaaacccaatgtcaaaccccaagcattgcca
ctaaagaagagagtggctcatgaagccaaacatacagagcagccagtagctaataggaga
cctcagccccaggtgctggttcccttacgtgtgcctgcggtgtcaggattcgcctcccag
ccctccatcacccccaagatccagcaggtacggcagggagcctccatgttgactgcttca
gttaaaggtggtcaggcttttgtttcctccacctgtcagtggaagccagagacccagatg
gcaccttttcctttaactcaaacccctgaaaacctgcagcctgctcctgtgcaaaatgct
tacatgaactacgtatctttgggaactgccgtgatcggagtgggcaacaacttgcacttg
atcctccccgagggcacgttccccctgcctgtcacttccggttccagccaagttacttca
gtgctaaccccactcagtcaagtgtacactagcactgccgctgtgaggcaaatgtaccat
ccacctgctgttacccctgtgcaaagataccgcaccacagcacctgttctcattcctgcc
ccggcacgtaaaccttcactgaactctgctttttcatcggcacattcaagtccagctgtt
tccactactcctctagctgctgtccattctactgtcaagccagtgcccactaaacggaag
ttgaagcagcagtgtgaggccactaaagacaaagtgccccatgacatccgacagcgttat
gtcaacatgtttacagaggagttcctcaagacaacagccaatgttaatgaagcctttgaa
aaggcacttgctgaagagaaggctgtgtataatcgcagtgtgaacaaactcaaatatctg
agtgttgcagtgaatgcactgaagaagctgaagaaccaaagtgctgttgctgataaagat
gaaaatgcagtcaacagccaaagatccaaaggcaacattcctcttaatatgaagaatttt
agagaaaacgcagatatggcattttatgagagtttgaaggactatattttgactgaggaa
aggctggttgagagcaactatcctgtccagcacccagagaaacctggttgggctgttctt
tttgctgacaataagaaaggcagtgcggacccccttaagaggatctgctgtcgatgtggc
gctacatactctgtgaaccatatgggcaaacacatccgtaaggaggagtgtaattaccac
tatgggaaaggagttacgaaaaaagtgccaggtggagtggagacccgctacagttgctgt
gagggagtcatgggagcacctggatgtcaggtgtttaagttgcatgtccatgattccctc
agcctggatgggtttgtctcgactacccccagacatccctcagataagaattgtcctggg
gtctactccttgaattgtgaaatgtgttatactattcatggtctggagctatccagagtg
acggtggtcaactctagtctgcatgtcgtctatgacaccttcgtcagacctgataatgag
gctatcgactataacaccaggttttcaggcatcactgaggaagatgtgaagggtaagtgc
acctccctcacagaggtgcaggagaccttattgagctttatcagcgccgacaccattctg
attggacatggcctggaaatggacctctgtgccctgaagttgctccatggggtggtggta
gacacatcagtggtcttccctcaccgtctgggcctccctcacaagctgaccctcaacaac
ctcactgctgaatacctcagaaggatcatccaagagagtgtttgtggccacgacactgca
gaagacgctgctgcctgcatggagcttatgttatggaaggtcaaagaagatggaaaactg
aaaaaatga
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