Sander lucioperca (pikeperch): 116055197
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Entry
116055197 CDS
T07345
Symbol
zgc:172302
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X2
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc02010
ABC transporters
sluc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
116055197 (zgc:172302)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116055197 (zgc:172302)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sluc02000
]
116055197 (zgc:172302)
Transporters [BR:
sluc02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
116055197 (zgc:172302)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
Motif
Other DBs
NCBI-GeneID:
116055197
NCBI-ProteinID:
XP_031162863
Ensembl:
ENSSLUG00000002959
LinkDB
All DBs
Position
11:complement(286640..319652)
Genome browser
AA seq
2382 aa
AA seq
DB search
MGVFRQFGLLLWKNITYRRRNKIQLIIELLWPLFLFVILISVRHSHPPYKQSQCHFPNKA
LPSAGTLPWIQGIICNINNPCFHSPTPGETVGQFGNFDNSILSRLFVDVETVLSYSGNQR
FSGFQDLMESVRRLGERPGAWPNLPVEEYLRANETFSTFLLTNGSLSPVTVDQLLKAHLN
FQVSVAGAQMQLKDLVCNASMLGQFLTVDGGEDAMNDLQTQLCNLPADVLREAERLFLSQ
LDFTKFFTRDRLMANAGDFRIISEAVTSVSQDLAVLINDLSSLSSFADMSAALRLLSPEN
RSALPRESFRAFSRIMCGHPEIGGERIPSLNWYEDNDIKSFLGKNGMEDTDMDHDNNTTP
FCKSLIRGLESNPLSRIVWRGIKPLFIGKLLYTPDTPAVQQVMKEVNKTFEDLQVLQELN
EAWLEVGPQIKSYMESSVEIQLLQDLLRRPEVAVLVNLRLENTSWTASRIARFLSTPSPD
TPRKPGAAPTWLDVYNDLSHTITTLAQVTECFSLNKLEGLETEGQMIDRALELLEDRQFW
AGVVFLLPNSSSPNLPPHVTYKIRMDIDDVTRTNKIKDRFWDPGPAADPFNDMRYIWGGF
VYVQDLVERAVSRILTGVQQTTGIYIQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVA
MIIKGVVYEKEARLKETMRIMGLGTGTLWFSWFISSIVPFLISAGLLIALLKWGDILPYS
DPTVVFFFLTAFANATIMQCFLISTFFSKANLAAACGGLIYFGLYLPYVLCVAWRDRLNT
TYRVLASFLSPVAFGFGCEYFSQYEEQGVGIQWYNLHSSPVEGDSYRFTTSIVMLYVDAF
IYATAAWYIEAVFPGEYGIPRPWYFIFQMNYWGGVPLEVGLPIPPAPTEQDEDNIEPEPV
NLVLGVNIRNLVKIYKKGAKLAVNHLNLKFYEGQITSFLGHNGAGKTTTISVLTGLFPPT
SGTVYIKGMDIRYDMEIIRKTLGVCPQHNVLFDILTVEEHVWFYGCLKGLSEAEVKAELD
TLLEDVGLLHKRHEQTKNLSGGMRRKLSVAIAFVGGSKVVVLDEPTAGVDPYSRRGIWDL
LLKYRKDRTIILSTHYMDEAELLGDRIAIISQGKLCCCGSPLFLKSRLGSGYYLTVVKRE
GLDTSTPSSTSICTSTSISTNKLPPLKDSESSMSEDTGLGSEESSSYLAALLSLAQHHIP
GARLVEDSGREAVVNLPQAAAKDSSLAVFLFELDQRLTEMGISSYGLSDSTLEEIFLRVA
EETGVDAEPELQAESPHRQQPSAAQRAESQNAEEPETGRKRLRKQEPQETDLLSGEGRGG
IPLTGWWLTWQQLRALFIKRLLYARRSRRGFFAQIVLPAVFVLVALLFSLIVPPFGKYPA
LQLQPWMYGEQYTFYSNDAPGNPAIENLLEALLDQPGFGTKCMEKEEEGNSTSPQCEGVR
GGLFMRPQVSYSTWQMFSRGNWSKDAPSPDCQCSTEDVRRMLPDCPQGAGGIPPPQIKRL
TGDILQNLTSYNISDYLVKTYSQILKKSLKTKKWVNEFRYGGFSLGGSATQTLSQVHLVQ
DSIIAIRTRYRVPQNSSVDHLLNRLPDVLRGLNSRNNVKVWYNNKGWHAMVSFVNVMNNG
LLRASLPPGPERKKYGITAYNHPLNLTKEQLTEMAMMTTSVDVLVSICVIFAMSFVPASF
VLFLIEERVSKAKHLQFVSGVKPILYWLANFTWDMLNYTVPATMVVLIFICFQQQSYVSE
TNLPALVLLLLLYGWSITPLMYPASFVFTVPSTAYVVLTSINLFIGINGSIATFVLELFV
DEHLNEVNRILKKVFLIFPHFCLGRGLIDMAKNQAMADAFQRLGTKQTLDPLQWDFVGKN
LFAMAAEGVIFFIFTILLQYKFFIRFRPWWAKPEMPPLGPEDEDVARERERVISGKAQSD
ILTMIDLSKVYKSGRKPAVDRLCLGIPRGECFGLLGVNGAGKTSTFRMLTGDTAITYGEA
LLNHHSVLTEMERVHQLMGYCPQFDAISDLLTGREHLELYARLRGVPEESVTKVAQWGVK
KLGLTQYAEREAGGYSGGNKRKLSTAISLIGAPPVIFLDEPTTGMDPKAKRFLWNCILSV
TKEGRAVVLTSHSMEECEALCTRMAIMVNGRFQCLGSVQHLKNRFGNGYTIILRLVDAKS
NPDSCPISTYMKSSFPSIELKERHQSVLQYQLPSHACCLARVFEVLANNYEEMGVIDFSV
SQTTLDQVFVNFAKEQTDDDFLTDVVISNLTTLHTRINTPTIQPQPPITPPHSSQTPQQH
GKSSDSKPKERKSKKPKVGKDKSKDGKANGEKSSSTAMTRIPQREEKAQRTSRRGSSGSD
SSNDGVQGESSKSSKSKHREESSSKNPSALFIVDGNTQDSTL
NT seq
7149 nt
NT seq
+upstream
nt +downstream
nt
atgggggttttccgacagtttggcctcctgctctggaagaacatcacataccgcaggagg
aacaagatccagctgattatcgagctcctctggccgctcttcctcttcgtcatcctcatc
tctgttcgtcattcacaccctccttacaaacagagccaatgtcactttccaaacaaagcc
ttgccatcagcaggcaccttgccctggattcagggcattatctgcaacatcaacaacccc
tgcttccacagcccaacaccaggggagacagtgggccaatttggcaactttgacaactcc
atactgtctcgtctcttcgtggacgtggagactgttctgtcctacagtggaaaccagaga
ttctcgggctttcaggacctgatggagagtgtccgaaggctgggagagagacctggagcc
tggccaaatctcccagtagaagaatacctgagagccaatgagacgttctccaccttcctc
ctgaccaatggcagcctgtcgcctgtgactgtggaccagctgctgaaggctcatctcaat
tttcaggtttcggtggctggagctcagatgcagctgaaggacttggtgtgtaatgcgagc
atgttaggacagtttctgacagtggatggaggagaagacgccatgaatgatctccagact
cagctgtgtaacctgccagctgacgtcctgcgggaagctgaacgccttttcctttctcag
ctcgactttaccaagttcttcacaagagaccgtctgatggcaaatgctggagacttcagg
atcatcagtgaggctgtcacctccgtttcccaggatctggctgtcctcattaatgatttg
tcctccctctccagctttgcggacatgagcgcagctcttcgtcttctgtctccagagaat
cgctcagcgttgcccagggaaagttttcgcgctttttcaaggatcatgtgcggtcaccct
gagattggcggtgagcgtatcccatcgctcaactggtatgaggacaatgacatcaagtcc
ttcttagggaaaaacggcatggaagacacagacatggaccatgacaacaacaccactcca
ttctgtaaaagtttgatccgaggtctggagtccaaccctctgtctcgcattgtgtggcga
ggaataaaacctctgtttattggaaaactgctgtacacaccagacactcctgcagtacaa
caagtcatgaaagaggtgaacaagaccttcgaggacctgcaggtcctccaggagctgaat
gaagcctggctggaggtgggaccacaaatcaagagttacatggagagcagtgtggagatt
cagctgctgcaggatttgttgaggcggccagaggtcgctgttctggtcaacctgcgtctg
gagaacacgtcctggacagcctcgcggatcgcacgtttcctgtcaacaccctcgccagac
accccaaggaagcccggagcagcgcctacctggctggacgtctacaacgacctcagccac
accatcaccacgctcgcacaagtcactgagtgtttctctctgaacaagctggaggggttg
gagactgagggtcagatgattgacagggctttggagctactggaagacaggcagttttgg
gcaggtgtggttttcctgctgcccaactcctcgtcccctaacctgccgccccacgtaacc
tacaaaatccgaatggacattgatgatgtgacccggaccaacaagatcaaggacaggttt
tgggatcctggtccagcagccgacccatttaatgacatgcgctacatttggggcggcttc
gtgtacgtccaggacctagtggagcgagctgtgagccgcatcctgactggagttcaacaa
acaaccggcatctacatccagcagatgccctacccctgctacgtggatgatgttttcctt
cgagtgctgaaccgctctctgccactcttcatgacactggcctggatctactcggtggcc
atgatcatcaaaggcgtggtgtacgagaaggaggcgaggctgaaggaaaccatgaggatt
atgggtctgggaacgggaacgctgtggttcagctggttcatcagcagcatcgtccctttc
ctgatctctgcagggctccttattgctctgctcaagtggggggacatcctgccatacagc
gacccaactgttgtgtttttcttcctgacggcgtttgccaacgccaccatcatgcagtgt
ttcctcatcagtaccttcttctctaaagccaacttggctgctgcatgtggagggctgatc
tacttcgggctttacctgccatacgtactgtgtgtagcctggagagaccgcctcaacacc
acctacagagtccttgctagtttcctgtcccccgtggcctttggcttcggctgtgagtat
ttctctcagtatgaagagcaaggcgtgggcatccagtggtacaacctccactccagcccc
gtggaaggagactcataccgcttcactacctctatagtcatgctttatgtggacgccttc
atctacgccaccgcagcctggtacattgaggcagtgtttcctggtgaatatgggatcccc
aggccctggtacttcatcttccagatgaactactggggtggagttcccctcgaggtgggc
ttaccgatcccccccgcacccacagaacaggatgaagataacattgaaccagaacctgtt
aacctggtcctgggtgtgaacatcagaaacttggtgaaaatctacaagaagggagccaaa
ctggccgtcaatcacctcaacctgaagttctacgaggggcagatcacctctttcctcggc
cataacggagccggcaaaaccaccaccatatctgtcctgactggcctgttcccacccacc
tcgggcactgtgtacatcaaggggatggacatccgctatgacatggaaattatccggaag
acactgggagtttgtccacaacacaatgtcctgtttgacatactaacagtggaggagcat
gtgtggttttatgggtgtctgaagggtttatctgaagcagaagtaaaagctgagctggac
actctgctggaagatgtcggcctgctgcacaaacgacatgaacagaccaaaaacctctct
ggtggcatgcggaggaagctgtctgtggcgatcgcgtttgttggaggctctaaagtggtt
gttctggatgaacccacagccggcgttgatccttactcccgcagagggatctgggatcta
ctgcttaaataccgcaaagaccggaccatcatcctgtccacccactacatggacgaggca
gagctgctcggtgaccggatcgctatcatctcacaggggaagctgtgctgctgtggctca
ccgctcttcctcaaatcccgccttggatctggctactacctcactgtggtgaagagggag
ggactggacaccagcactcccagcagtaccagtatctgcaccagtaccagcatcagcacc
aacaagctgcctcctctcaaggacagtgagtcatccatgagtgaggacaccggcctggga
agtgaggagagcagttcatacctggcggcgttgctttccctggcacagcaccacatcccg
ggtgcgaggctggtggaggactcagggcgcgaggcggtggtcaacctgccgcaggcggct
gccaaggacagcagcctggccgtcttcctgtttgaactggatcagagactgaccgagatg
ggcatcagcagctatggcctgtcagacagcacactggaggagatctttttgcgagtggca
gaagaaaccggcgtggatgctgaaccagagctgcaggctgaatctccccacaggcagcag
ccatcagctgcacagagggctgagagtcaaaatgctgaagaaccagagacaggaaggaaa
aggctccgtaagcaagaacctcaggagacagacctgctgagtggagaaggccgaggtggg
atccccctgaccggctggtggctgacctggcagcagctgagagctctcttcatcaaacgc
ttgctttatgctcgaaggagccgcaggggcttcttcgctcagattgtcctgcctgctgtg
ttcgtgctggtcgctctgctcttcagcctcattgttcctccgtttgggaagtatccagct
ctgcagctgcagccctggatgtacggagaacaatacaccttctacagcaacgacgcacct
gggaacccagccattgagaacctgctggaggctctgctggaccagccaggttttggtacc
aagtgcatggagaaagaggaagaaggcaacagcacgagtcctcagtgtgaaggcgtgcgg
ggcggcctattcatgcgaccacaggtctcctactccacctggcaaatgttcagcagaggc
aactggagcaaagacgcaccgtctcctgactgtcagtgtagcacagaggatgtccgccgg
atgctccccgactgcccgcagggtgccggtggaattccgcctccacagattaagaggctg
actggagacatcctacaaaatctgacaagttataacatctctgattacctggtgaaaacc
tactctcagatcctcaagaaaagcctaaaaaccaagaagtgggtgaatgaattcagatat
ggaggtttctccctcgggggcagcgccactcagactttatctcaggtccaccttgtccaa
gactcgatcatagcgatcaggactcgttatcgagttccgcagaacagttcagtggatcat
ctgctaaacagactgccagatgttctacgaggactgaacagtcgaaacaatgtcaaggtg
tggtacaataacaaaggatggcatgccatggtgtcatttgtcaacgtgatgaacaacggc
ctgctgagagccagtctgccaccaggtccagagaggaaaaagtacggcatcactgcctac
aaccacccgctcaacctcaccaaggaacaactcacggaaatggccatgatgaccacatca
gtggatgttctggtttctatctgtgtgatctttgccatgtcctttgtaccggcaagcttc
gtcctttttctgattgaggagcgagtcagcaaagccaaacaccttcagtttgtcagcggg
gtcaaaccaatcctctactggctggccaacttcacctgggacatgttgaactacacggtc
ccagccaccatggtggtgctgatcttcatctgtttccagcagcagtcgtacgtctcagag
accaacctgcctgctctcgtcctgctcctcctcctctacgggtggtccattacccctctg
atgtacccagcatcctttgtgttcaccgtccccagcacagcctatgtggttctgacctcc
atcaacctcttcatcggaatcaacggcagcatcgccaccttcgtcctggagctgtttgtt
gacgagcatctgaacgaggtgaacaggatcctgaagaaggtgtttctcatcttccctcat
ttctgcctgggacgaggactcatcgacatggccaaaaaccaggccatggcagacgccttc
cagagactgggcacaaagcagaccctggaccctcttcagtgggacttcgtagggaagaac
ctatttgcgatggcagctgaaggtgttatattcttcatcttcaccatactgctgcagtac
aagttcttcattcgcttcaggccgtggtgggccaagcctgagatgcctcctcttggtcca
gaggacgaggacgttgccagggagagagagagggtcataagtggcaaagcccagtcagac
atcctcaccatgatcgacctgagcaaggtttataaatcaggcaggaagccggcagtggat
cgtctctgcctcggaatccctcgtggcgagtgttttggcctgctgggggtgaacggagca
gggaagacctctacctttcgcatgctgaccggagacacggccatcacctatggagaggct
ttacttaatcaccacagtgtgctgacagagatggagcgagtccaccagctgatgggttac
tgtccacagtttgacgccatcagcgacctgctgacaggtcgggaacatctggagctgtac
gcccgcctacggggagttccagaggagtctgtcaccaaggtggcgcagtggggcgtgaag
aagctgggactgacccagtacgctgagcgggaggctggaggctacagcggaggcaacaag
agaaaactctccactgccatctccctcatcggggctccacctgttatattcctggatgag
cccaccactggcatggacccaaaagccaaaaggtttctgtggaactgcatcctcagcgtc
actaaagagggaagagctgtagttctcacctcccacagtatggaggaatgtgaggctctc
tgcaccagaatggcaatcatggtgaacggcagattccagtgtctcggatctgtacaacac
ctgaaaaacaggtttggtaatggctacaccatcatccttcgtttggtggacgctaaatcc
aacccggactcgtgccccatcagcacctatatgaagagctcttttcccagcatcgagctg
aaggagcgccaccagagcgtgctgcagtaccagctgccctcacacgcctgctgcctggct
cgtgtcttcgaagtgctggccaacaactatgaggagatgggcgtcatcgacttctcggtt
tcacagactaccctggaccaggtgtttgtcaactttgccaaagagcagacagatgacgac
ttcctcacagatgtggtcatcagcaacctcactacactgcacactaggattaacactccc
accatccaaccacagccgccaatcactccccctcattcaagccagactccacagcagcat
gggaaatcatctgacagcaaaccaaaagagcgtaaatcaaagaagccaaaagttggcaag
gacaaatctaaagacggcaaagctaacggagagaaaagcagcagtacggcaatgaccaga
atacctcagagagaggagaaggctcagagaacaagccggaggggcagcagtggatcagac
agcagtaacgatggagttcagggagaatccagtaaatccagtaagtccaaacacagagaa
gagagctccagtaaaaatccttctgcactctttatagtcgacggcaacacacaggacagc
acactgtaa
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integrated database retrieval system
