Sander lucioperca (pikeperch): 116055261
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Entry
116055261 CDS
T07345
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116055261 (col17a1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116055261
NCBI-ProteinID:
XP_035848493
LinkDB
All DBs
Position
15:22433778..22466883
Genome browser
AA seq
1822 aa
AA seq
DB search
MDELTRQMDFSGGLSGEKVVTETVTSTTRLTSLPPKGTSGSNHRNMSSSAGGLGLEKNVL
TQNSSGTYFSSSSVGVNTSSFSSSSGVYLGGDSSGRDDGGGLYIDGEGYGSGGGGGGGGG
SGGRGGSSYLVSSVSKVRSSSSGGARRAQTAGSSGGLSPGFRERKTISSRSGGYDGSSSG
NSSPEFTRKDYGIYCSNTTRGRSESRESEIRARLQSASPTAGRWTELDDVKKLLKGRSCS
VSPTRSSNASITLPVPKKASVKTQTITSVTSQSGSTSFGSGVRSGGFHTIDTSGLYDTGL
TSGQFDTGVKSGQYDITLKSGQYDTGVKSGQYDTGVKSAQFDTGVKSGQYDITLKSAQYD
TGVRSAQYDTSVKSAQYDTGVRSGQYDTSVRSGQYDTGVRSGQYDTSVRSGQYDTSVRSG
QYDTSVRSGQYDTLDATLPTFSWSTSTLPSPSTTVIAGNTSGYTYQAGTNNMAGGSSPLS
LTSPSSLSVYGFQNNLAPTSPSVLTTSGGNVNAHLGGYGVQKNLSNGGGFVSSSTGVSTT
TRSQTDDSLKKDYKYLISEKENAPAKREAEMLILAKDSGKQFTTSSSMQMGGGSLSGDSI
KKEKLISSYSEKAQLKTETGNSYYGSSGVVMKDKATYAEIHRDSGIFGGGGLCCCSDSCC
SWWKWLLGLLLLSLLLLGLLFGLIALAEDVRKLKNRVATLEAESSVASARTSRLSGSNND
IVGAAGSGGTSHTDNTLLLGPGGGGSGSKTRMGIAAGAGGSTGGNGIDVVIGGGSAGTSG
AAGEVAGGAGTSFSGSAGGTGGTSFSGGTGLGTGLSGGYIDSANLQITIQRMLRTEMQSQ
SYRAFLASSVQGERGLPGPKGDPGSKGDSGFPGLQGAPGHVGPEGPKGQKGSQGDHGLDG
GPGIRGREGPPGPRGEAGPPGFGAKGDRGAPGDPGPVGPAGPKGTSGIPGLSGVPGQPGA
QGFRGEAGLPGPKGDRGLAGFQGLKGEAGDTGLKGVKGDPGLPGLQGPAGERGIKGSMGL
SGVDGLKGSKGDQGHAGPPGLRGPAGPPGDAAPPGTSGPQGPPGIPGNPGRPGSKGESGQ
PGRIINAAGATSFGIPGPPGPSGPPGPAGPPGLSGPIGPAGLPGQPGAKGDRGYKGEQGE
QVITARTSESVSSRQFSASGGLGQPGPPGPPGQPGRPGDSRQGPPGPPGPPGQPGYGIPG
PKGDKGEAGFASSSGTFYTGPPGPPGPSGPKGLTGSPGPRGYQGEPGQQGVPGTPGRPGS
SERVSTYGGGHGIPGPPGPPGLPGPQGPQGFKGDTGAPGVPGFSRGSVSVTSGPPGPAGP
PGPPGQPGSFASSSEMRQYITDYLSRSRQSSIPGPPGPPGPPGIPGSFSGSIEDISTRII
AYLQRSDSGLSIGVQGPPGPPGPPGYGSLTVSSLIAMLQREDVRRYLSGPPGPQGPPGQP
GTSGGFSGSYSIEEIATYVFKIMNDRGIARGPPGPPGPAGPSGAGGSGITTATIDYSALI
KQSDFRSWISSAIQRGHPGPPGPPGVQGQPGPPGPQGPAGVSTATVYGGAGGRGYSLEEI
QRYLQGSGFRGVPGPPGPQGPQGPQGPPGSYSGSISYNGNFPRESIRTEIQQYLTSDSVR
RAIIGPPGLPGPPGQKGDRGEPGYIQSHTQSQSYTQGESRHGSERRDIHVSKLTQTLDHS
NVANVAIKVTDYIKSQGLLQEYLVEGPWRANVRAIQGPPGPPGPVGPPGQSRVIGSYGNV
TADLMEFFRTYGTIPGTPGAPGPRGERGYPGPRGEKGDPGHQGLPGTPGPYTFQIPHTVQ
KRDAGNNVVGRHRQHRRHASGA
NT seq
5469 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacgagacagatggacttctcaggaggcttgtcaggagaaaaggttgtg
acagaaactgtaacctccacgaccagactgacttctctaccaccaaagggaaccagtgga
tcaaatcacaggaatatgtccagcagtgctggagggctgggcttggagaagaatgtctta
acccagaacagcagtggaacttatttctcttcatcctctgtaggtgtgaacaccagcagc
ttcagctcctcctcaggagtttacctaggaggagactcctcgggaagagatgatggagga
gggctgtacatagacggagaggggtacggaagcggaggagggggaggaggaggaggagga
agcggcggcagaggcggcagcagttatctcgtgagctcggtgtcaaaggtcaggtccagc
tcgtcgggtggtgccaggagagcgcagactgctggctcatcaggaggcctgtcgccaggt
ttccgggagaggaagaccatatccagccgctcaggaggttatgatggaagttcgagtggt
aattcctctccagagtttacacgaaaagattatggaatctattgctccaacaccacaaga
gggaggagcgaaagcagagagagtgagatccgagccagattacaaagtgcctctcccact
gccggaagatggacagagctggatgacgtgaagaagctgctgaagggacgctcctgcagc
gtcagccccactcgctcctccaacgcctccatcaccctgcctgtccctaaaaaggccagc
gttaaaacccagaccatcacctctgtgacctctcagtcgggttcaacttcatttggctct
ggtgtgagatcaggcgggttccacaccattgatacatcaggcctgtatgataccggtctg
acatctgggcagtttgatactggtgtcaaatcaggccagtatgatatcactctgaaatca
ggccagtatgatactggtgtcaaatcaggccagtatgatactggtgtcaaatcagcccag
tttgatactggtgtcaaatcaggccaatatgatatcactctgaaatcagcccaatatgat
actggtgtgagatcagcccagtatgataccagtgtaaaatcagcccagtatgatactggt
gtgagatcaggccagtatgataccagtgtgagatcaggccagtatgataccggtgtgaga
tcaggccagtatgataccagtgtgagatcaggccagtatgataccagtgtgagatcaggc
cagtatgataccagtgtgagatcaggccagtatgacacgctggacgctacacttcctact
ttctcttggtccacctccacgctgccctccccctccaccacggtcatcgctggcaacacc
agcggatacacgtaccaggctggcaccaacaacatggcgggaggatcgtcgccactcagc
ctcacctcaccctcgtccctgtcagtttacggctttcagaataatctggctcccacctct
cccagtgtgctcaccaccagtggagggaacgtaaatgctcacctaggaggttatggtgtt
cagaagaatttgtcaaatggtggcggtttcgtcagcagcagcactggagtctctacaacc
actagatcccaaactgatgattcacttaagaaagactataagtacctgatctctgaaaag
gagaacgctccagccaagagggaagcagaaatgctgattttggctaaagacagcgggaag
cagttcaccaccagcagcagcatgcagatgggaggagggtcgctgtcaggagattcaata
aagaaagagaagcttatttcaagctacagtgagaaggcgcaactgaagacagagacaggc
aactcttactatggatcatctggagtggtaatgaaggacaaagccacctatgcagagatt
cacagggacagcggcatctttggaggtggaggactgtgctgctgctccgactcgtgttgc
tcctggtggaaatggctgctgggacttctcctcctctccctgctcctgctgggactcctg
tttgggctcattgcactcgctgaggacgtgagaaagctgaagaatcgagtggctacgctg
gaggccgagtcttcggtggcttctgcccgtaccagccggctgtcaggttctaacaatgac
atcgttggggcggctggaagtggagggacctcccacactgacaacacgctactcctgggc
cctggaggtggaggctctggctccaaaacacgaatggggattgcagctggtgctggcggc
tccactggtggaaatggcattgatgttgtcattggaggtggttctgctggcaccagtggg
gccgccggggaagttgctggaggtgccggtaccagttttagtggcagtgccggcggtact
ggtggtaccagcttcagtggtggcactggtctcggaaccggtttgagtggaggatacata
gactctgccaatcttcagataaccatccagcggatgttaagaactgaaatgcaatcacag
tcatacagagcttttctagcatcgtcagtgcagggagagagagggctgcctggacctaaa
ggggaccctggatctaaaggagattctggtttccctggacttcaaggtgctccgggacat
gtaggacctgagggtccaaaaggacagaaaggaagccaaggtgatcatggactggatggg
ggaccaggcatcaggggtcgcgagggcccgcctggccccagaggtgaggcaggacctcca
ggctttggagcgaaaggtgacagaggtgctcctggggatcctgggcctgtcggcccagct
ggaccaaaaggcacatctggaattcctggactttctggagtaccaggtcaaccaggtgct
cagggtttccgtggcgaggcagggctacctgggcccaaaggtgacagaggacttgctgga
ttccaaggacttaaaggcgaagctggtgacacaggtctcaaaggtgtgaaaggtgatcct
ggtttaccaggtctgcaagggccagctggagagagaggaatcaaagggtcaatggggttg
tctggagtcgatggattgaagggatcaaaaggtgaccaaggacatgctgggccccctgga
ctcagaggtcctgctgggcctcctggagatgctgcacctccaggaacatctgggcctcaa
ggaccaccagggataccagggaatccaggacgaccaggctctaaaggtgaatcaggtcaa
ccaggaagaatcatcaatgcagctggcgccacttcttttggcatcccaggaccacctggg
ccttctggtcctcccggccctgcaggacctccaggattatcaggtcccattggccctgct
ggtctgcctggccaacctggtgctaaaggggacaggggatataagggagagcagggagaa
caagtaataactgcgagaacgagtgaaagtgtatcctccaggcagtttagtgccagtgga
ggtttaggacaacctggcccacccggcccaccgggtcaacctggacgtccaggagattca
agacaaggacctccaggaccacctgggcctccaggtcagccaggttatggaattccagga
cccaaaggagacaaaggagaggcgggctttgcatccagctctggaacgttttatactgga
ccaccaggaccacctgggccttctgggcctaaaggattaacaggttctcctggaccaaga
ggataccaaggcgaaccaggccaacaaggtgtgccgggcaccccaggaagaccaggaagc
tctgagagagtgtcgacttatggtggaggacatgggatccctggaccaccaggtccaccg
ggacttcctggaccacagggaccacagggatttaaaggggacactggagctcctggtgtt
cctggcttttcaagaggctcggtctcagtcacctcaggccctcctggccctgcaggtcct
cctggccctccaggccagccaggctccttcgcttcttctagtgagatgcggcagtacatc
actgactatctaagtagaagcagacagtctagtatccccggacctccaggtccacctggg
cctccaggaatccctggaagcttttcaggctctattgaggacatctccactcgtatcatt
gcatacctgcaacgttcggactcaggccttagcattggtgtccagggtcctccaggacca
cctggtccacctggctatggatccctgacggtcagcagtctcatcgccatgcttcagaga
gaagatgtgaggagatatttgtcaggaccaccagggccacaaggaccaccgggacaacca
gggacatcgggaggattttcaggcagttacagtatagaggagatagccacatatgtcttc
aaaatcatgaatgaccgagggattgctagaggtccgcctgggccacccggtcctgctggg
ccttctggtgcagggggatctggcatcactactgctacaattgactattctgcactgata
aaacagtcagacttccgctcatggattagctctgccatacaacgcggtcatcctggtcct
ccgggtcctccgggtgtccaagggcaacctggccctcctggccctcagggccccgctgga
gtctccactgccactgtgtatgggggcgcgggaggtcgtggctacagcttggaggaaatt
cagcgttacctgcagggttctgggttcagaggtgttcctgggcctcctggtcctcaaggt
ccacaaggtccacagggtccaccaggcagttacagcggatccatttcctacaatggaaac
ttccctcgggagagcatccgcactgaaattcagcagtatctgaccagtgacagtgttcgt
cgtgccatcatcggacctccgggccttccaggacctccgggtcagaagggagatcgcgga
gagccgggttacatccagagccacacgcaaagccagagctacactcagggtgaatctcga
catggctctgagcgcagagatatccatgtcagcaagctcacacagacattggaccactcc
aacgtcgccaacgttgcaataaaagttacagactacatcaagagtcaaggcctgctacag
gagtatctggttgagggtccttggagggcgaatgtacgagcgattcaaggcccccctggt
ccacctggccctgtcggaccacctggtcagagccgcgtcatcggttcctacggcaacgtc
acagctgacctcatggagttcttcagaacctatggcaccatccccggaactccaggagcc
cctggaccaaggggtgagagagggtacccaggacccagaggagaaaagggtgatcctggg
caccaaggtttaccaggaacaccagggccatacactttccaaattccacacacagtgcag
aagagggatgcaggcaataatgtggttggtcgtcatcgtcagcatcgccgtcacgccagc
ggtgcctaa
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