Sander lucioperca (pikeperch): 116055273
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Entry
116055273 CDS
T07345
Symbol
arhgef18b
Name
(RefSeq) rho guanine nucleotide exchange factor 18 isoform X1
KO
K21066
A-kinase anchor protein 18
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
116055273 (arhgef18b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sluc04131
]
116055273 (arhgef18b)
Membrane trafficking [BR:
sluc04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
116055273 (arhgef18b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_16
RhoGEF
PH
PH_13
SOS1_NGEF_PH
C1_1
Motif
Other DBs
NCBI-GeneID:
116055273
NCBI-ProteinID:
XP_031162986
LinkDB
All DBs
Position
11:complement(6123016..6166751)
Genome browser
AA seq
1676 aa
AA seq
DB search
MADSPLNNSWPSFSKLWLKRWSFKRASECKPCQSCGPPSAQICVQPHALSETGSSSSLSP
ASITEDGFFGSTNKDQDACSVVSDYDCPCVEVSSSVEDLLGLSSSLRDSEYFKDLQGEIA
PSTVTTVPESKTLNVGLQVSLNTDSPAINQLAQTCTLSPQDNALSSPYYIHPAEELHQNF
VVTQLSPKLLPGCTFDRSDSSGPAVGLSLTIDLNGLLESMETAKGITGPEEVKEQPTMDF
DGESDLDSVPILVRSMSTSRRHSWGVPVSPINLGRRLSLDAMATDSDGEREDDEEGQKCL
FQSTQQTYSCAACPGEETDDSRLTVPRPRARVTSMAGGARHLYSRSEILATDEYSRAAHI
SCVVQTSKQAARAAGAEEFDPEENLHSTEGHMLMVQKVLQELKLYHGAKQRNNRTDNKVS
GNVTWYEFLNNENDEEEDRTEKVEKGTKVKRTLSSLRNRVTGSFNKDKGKNREKEQQRER
GKEKEREAKEKVCDSRSSNSHYLMPCAFSSCATCSLCSKTLQRKHGLQCMNCAVNVHKSC
KSLLGECTSSRNKRDFPPRTSGSPNLALKDRDRQREHLGPASSQALDGHPGFHSTPGMTI
SPSGPSTQYTSSTTASSLGHSLRHRNSLGSLPGEMDETDALRSKRCNEDAISLAPSTAES
IIVEDAHYAAVRADLESDAQDLEAESWSLAVDQQFVKKHSKEMVKRQDVIYELMQTEMHH
VRTLKIMLRVYVRELKENLQMDSGKLDCLFPRLENLLELHTHFLSRLKERQRENLVSPND
RNYAINRLSDILITQFSGEIGERMKDSYGDFCSHHTEAVSYYKEQLQNNKKFQNIIRRIN
NLSIVRRLGVTECILLVTQRITKYPVLVERIVQNTEAGSEEHENLTRALGLIKDTIVQVD
TLVNLHEKNSRLREIHNKMEPKALGKIKDSLVFRREDLVQGRRRLLHEGTVNWKAASGRL
KDILAVLLSDVLLLLQEKDQRYVFATVDNKPSVISLQKLIVREVAHEEKAMFLICASSNE
PEMYEIHTNSKEERNTWMAQIRQTVESCPHTEEKLFSEEEEARAFRLKEFQERLRQKDAV
VIQALTEKLQLFADMAESVAGLEDTASRSRLLLRGDASDLQQGESLLKGAIIEVENLQNL
LQSGVRDEAPTSRLEEGNGSGVLPRRADTFGGYDSSPTILSKNGSVKKNFSGECRNRDRS
QRASSDPQLKDLCGSHTLEQTVDESCCSPARWNRIWSTSFPEAEFFDRVLMLSQRLYSLQ
AIISQQDSHIELQRASLTERASLPGRHRGNVLLEQEKQRTLALQREELASFHKLQSQHRQ
EQQRWEKERERHRQQVEATEARLRQREEECRRLEGHLIEERKELESQRETYQQDLERLRE
STRAVEKEKERLEHQKKIKRKTIEVAPLSGSLNGELLMSSALNTSPSVSDLPLPQKPLVR
ASLSVAPADYQERPEVMLRREASSSTLPLKTEVPLHLFSTTNQQHKLVGVQQQIPTKLAA
FSSGKGKGGKIGKVSHRTDSTASVDMKQMLKLSARDDNPLKAKRSISPHQQLPLSAPPQS
LPLHHHADQLSPPDNAGPDTQPTSSISISHPSNVQKPPMPPAQSHPQPSIQPPTIPPHSQ
STGSLQFQPHLQPQGLSPNTQAHVQVNVHGLTHSHSMPPPYKIATEDLNKEDVIFF
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atggcggactctcctcttaacaactcctggccctccttctccaaactctggttgaagaga
tggtccttcaagagagcatcagagtgcaagccatgtcagtcctgtgggcctcccagtgcc
cagatttgtgtccagcctcatgctctcagcgagacaggatcttcctcctcactatcccct
gcctctatcactgaggatggcttctttggtagcaccaataaagaccaggatgcgtgttca
gtagtcagtgactacgactgcccctgtgtggaggtgagcagcagtgtggaggacctactg
ggcctcagctcttctctcagagactcggagtactttaaagacctgcagggagagatagcg
ccttccacagtaactacagtcccagagagcaaaaccctaaatgttggcctacaggtgtcc
ctaaacacagacagtcctgccatcaaccagcttgcacagacttgcacactctcccctcag
gacaatgcgctatcttccccctattatatacatcctgcagaagaacttcatcaaaacttt
gtggtcactcagctaagtccgaagttattgccaggttgtacctttgatcgcagtgactcc
tcaggccctgcagtagggcttagcttgacaattgatctgaatggactgttggagtcaatg
gaaacagcaaaaggaataacaggaccagaggaagtaaaggagcaacccactatggatttt
gatggagagtcagacctggacagcgttcctatcttagtcagatccatgtcaacgtctcgg
aggcacagctggggtgtccctgtgtcccccatcaacctggggaggagactgagtctggat
gccatggccacggacagcgatggagagagagaggatgatgaggagggacagaaatgtctc
ttccagtcgacccagcagacctacagctgcgcagcatgtcctggagaggagacagatgac
tccaggctgacggtcccccgtccaagagccagggtcactagcatggctggtggtgcaagg
catctgtactcccgctcagagatcctcgccacagacgaatattcccgtgctgcacacatt
tcttgtgttgtgcagacatccaaacaggccgcaagggcagcaggagcagaggagtttgac
cctgaagaaaacttgcattctactgaaggacatatgctgatggtacagaaagttctgcag
gagctaaagctgtaccatggagcgaagcagaggaacaacagaacagacaacaaagtttca
ggaaatgtcacttggtacgagttcctcaataatgagaatgatgaagaggaggatcgtaca
gagaaggtggagaaaggcaccaaggtgaagaggactctaagctctctaaggaacagggtg
acaggctccttcaataaagataagggtaagaaccgagaaaaagagcagcagagagagagg
gggaaggagaaggagcgggaggcaaaagagaaagtgtgtgacagcagaagcagcaacagt
cattatttgatgccatgcgctttctccagctgtgccacctgctcactgtgcagcaagacc
ctgcagagaaagcatggcctgcagtgcatgaattgtgctgtgaacgttcacaagagctgc
aagtctctgctgggtgagtgcaccagcagcaggaataagagagattttccaccgaggact
tcaggatctcctaatcttgcgctaaaagaccgggacagacagcgggagcatttgggccca
gcctcatcacaggccctggatggccacccaggttttcacagcaccccaggcatgaccata
agtccgtcgggacctagcactcagtacaccagctccaccacagcctccagccttggccac
agcctccgtcaccgcaacagcttaggatccctccctggggagatggatgagacggatgct
ctccgctccaaacgctgcaacgaagacgccatttcccttgctccctccaccgccgagtcc
atcatcgttgaagatgctcactatgcagcagtgcgggctgatctggagtctgatgcccag
gacctggaggcagagtcatggagtttggcagttgaccagcagtttgtcaagaagcactct
aaagaaatggtgaagagacaggatgtgatatatgagctgatgcagacggagatgcatcat
gtgcgaacactgaagataatgttgcgtgtgtacgtccgtgagttgaaggagaacctccag
atggactcaggcaagctggactgcctgttcccccgcttggaaaacctcctcgagcttcac
acacatttcctgtctcgtctcaaagagcgacagcgagaaaaccttgtttcgcccaacgac
aggaactacgcaatcaacagattgtcagacattctgatcacacagttctcaggtgaaata
ggagagaggatgaaggacagctatggagatttctgcagtcaccacacggaggctgtcagc
tactacaaagaacagctgcaaaacaacaaaaagttccaaaacatcatacggagaatcaac
aacctgtccattgtgcggaggttaggagtaactgagtgtattctgttggtgacgcagcgc
attaccaagtacccagtactagtggagcgcattgtgcaaaacactgaagcgggttcagag
gagcatgagaatctgactcgggcgctgggtcttattaaagacaccatcgttcaggttgac
acgctagttaatctccatgaaaagaactctcgactccgagaaatacacaacaagatggag
ccaaaggcactgggaaaaatcaaagatagcctagtgtttcgcagggaggacctggtgcag
ggcaggagacgactgctgcatgagggcacagtcaactggaaagctgcttctggcaggctc
aaagatattcttgcagtgctcctgtcagatgtgttgctcttgctacaagagaaggatcaa
cgatatgtgtttgctacagtggataacaagccgtcagtgatctctcttcagaagctgatt
gtcagggaagtggcccatgaggagaaagccatgtttcttatttgtgcctcgtccaatgag
ccagagatgtacgagatccacaccaactccaaggaggagcgaaacacttggatggcacaa
atacggcaaactgttgagagttgtcctcatacagaagagaagctgttcagtgaggaggaa
gaggcccgagctttcaggctcaaagaatttcaagaacggctgagacagaaggatgcagtg
gtcatccaggctcttactgagaagctgcagctgtttgcggacatggcagagtctgtggca
ggtctagaggacacagcttcacgttccagacttctgcttcgaggagacgcctcagacctc
cagcagggggagtccctgcttaaaggagctatcattgaggtggagaatctgcagaaccta
ctgcagtctggagtgagggacgaggctccaacctcacggctggaggaaggaaacggctct
ggggttctgcccaggcgagcagatacctttgggggctatgacagcagccccaccatcctc
agtaagaatggcagtgtgaagaagaacttttctggcgagtgtagaaaccgagacagaagc
cagagagccagctctgaccctcagctcaaagacctctgtgggagccacaccctggagcag
acggttgatgagagctgctgctctcctgccagatggaaccgcatctggtccacctccttc
cccgaggctgagttctttgacagagtgctgatgctctcccaaaggctctatagtctacag
gccatcatatcacagcaggacagtcacattgagctgcagcgggcctcgttgacggagcgg
gcctccctgcccggccgccacagaggtaacgtgctcttggagcaggagaaacagcggact
ctggccctgcagagagaagagctggccagcttccacaagctgcagtctcagcaccgacag
gagcagcagcgctgggagaaggagagggagaggcaccggcagcaagtcgaggccactgaa
gccaggctccgacaaagggaggaggagtgtagacggctggaggggcatttgatagaagag
aggaaggagctggagagtcagagggagacgtaccagcaggatctggagaggctaagagag
tccaccagagctgtggagaaagaaaaggaacgcctggagcatcagaagaagatcaagagg
aagactattgaggtggctcctctgtctggcagtctgaacggggagctcctcatgtcctct
gccctcaacacctcccccagtgtctcggacctgcccctccctcagaagcccctggtgcgt
gccagcctgtctgttgcaccagccgactatcaagagcgccctgaagtgatgttgcggcgg
gaggcgagctcttccaccctgccgctgaagacggaggtgccccttcatctcttcagcacc
accaaccagcagcacaaactggtgggggtgcagcagcagatccccacaaagctggccgcc
tttagcagcggcaaagggaaaggaggcaagattggcaaagtctcacatcgcactgacagc
actgcctcggtggatatgaaacagatgctgaagctgtctgcccgagacgacaaccccctc
aaggccaagcgttccatcagcccccaccagcagctcccgctgtcagcccctcctcagtct
cttcccctgcatcaccacgccgatcaactcagtcctccagacaatgctgggccagacacc
cagcccacctcctccatcagcatctcccacccttcaaatgttcagaagccccccatgcct
cctgcacagtcccatcctcagccctccatccagcctccaaccatccctccccactcacag
agcaccggctccctccagttccagccccatctgcagccgcagggcctcagtccgaacacc
caggcccacgtccaggtaaatgttcacgggctcacccacagccacagcatgccgccacct
tacaagattgccacggaagacctcaataaggaggacgtcatcttcttctaa
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