Sander lucioperca (pikeperch): 116055564
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Entry
116055564 CDS
T07345
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04510
Focal adhesion
sluc04512
ECM-receptor interaction
sluc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116055564 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116055564 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116055564 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sluc04147
]
116055564 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
sluc00536
]
116055564 (col4a3)
Exosome [BR:
sluc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116055564 (col4a3)
Glycosaminoglycan binding proteins [BR:
sluc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116055564 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116055564
NCBI-ProteinID:
XP_035856946
LinkDB
All DBs
Position
5:14947010..15004609
Genome browser
AA seq
1676 aa
AA seq
DB search
MEAPSGPRRRIVPPPPLVLVLVLLCCSAAPGHAERVCHCSGKSLCHCDGVKGQKGEPGYH
GYDGLPGVTGYPGYEGHQGSIGEKGELGQAGVSGLKGSRGLPGKPGFPGPPGLPGLPGHE
GPLGRPGLPGCNGTKGDVGYPGFPGVTGPVGFQGRPGLRGAKGDSLFFDLPLDIKGATGQ
QGPNGVKGLSGDPGEPGLPGPPGPAGLPGSPGFAGLPGEKGQEGPSPVIPGPRGQRGDRG
PPGIPGPKGIKLYAEGPKELKGEPGEVGAKGCHGLPGLPGKQGDKGGKGGRGDPGSLGKP
GKDGAPGELGEQGDPGYHGYLGPPGIEGAMGEKGDRGFPGLPGETVWIHTVLKGQRGVPG
PRGPPGVQGEQGLIGFPGMKGVPGVAPTGPPGPQGPPGSTGCKGEMGEPGPVIVGPPGQN
GIPGGLGVDGEPGEPGIPDFLPGDVGSPGAKGLKGSVGFPGFRGLEGQTGVKGELCFACE
FVLGNPGPPGKPGEPGEDGLPGSDGFPGPKGHKGVKGVVGLPGPQGPFGIPGLPGAPGPV
GDPGIMQRVQQKGEEGEQGEPGPPGLEGKDGSPGFTGPKGVLGQKGNPGPLGPKGDRGPL
GETGLRGLVGQIGPPGPPGIGLPGPSGSKGNVGVLGNRGDPGKPGEKGSPGEIITSPGDP
GQKGEKGLPGNPGPEGGVGLPGGPGFVGPRGERGDIGFSVQGPPGFPGVKGIKGPPGAPG
LPSFGIKGRAGPSGPPGMPGPKGGSGIGFPGQQGQSGPQGEDGSVGPQGNLGPQGTDGAP
GPPGQDGPPGPKGRSGLDGLLGAVGFVGPCLPGPPGREGEPGPMGLVGFPGIRGRKGLQG
DPGRQGVGDPGPQGPYGAPGFEGPTGPVGEFGLKGLRGKNGETGSTGFRGDMGPPGALGS
PGDDGKPGETGPPGPRGEMGVDGISRSQGPPGPQGNRGETGPKGFQTPVAMYGDPGDPGN
PGPPGVTGSKGETGFLGPQGLDGSIGRPGNFGPQGPSGDLGRDGENGPPGPFGPNGNQGD
MGWPGFKGEKGGAGPCGEPGSEGEPGPGGLKGAKGEQSPPGPGSKGFPGEKGNQGFSGSP
GMKGIPGDRGNFGPPGNCGPCGPKGNSGPPGCRGPAGPPGDKGCDGSPGESGPAGPTGLT
GNKGAPGDPGPSGPRGTQGQDGIPGPPGEKGAMGAPGIGPQGTDGKTGPPGCVGEKGPPG
ACGPPGPPGPAGNTGCHGAPGPPGPPGWPGTEGACTQGAKGEIGVAGQRGPKGPQGFRGP
PGPPGPGFKGDKGSKGATSCQGPSGSRGDPGPRGNPGQEGPPGPRGLKGQMGDTGVTGPV
GMKGEEGPSGNEGLQGAPGLPGRRGKRGQDTTREVVLVPGDPGSPGEKGNPGEKGPPGAQ
GTPGGPGLKGFIGNVGQRGRDGLPGLKGDQGDPGLHGAKGIAGPRGPVGFKGAKGVKGRS
DSCTDAKEVNGFLFTKHSQTILIPECPAGSTQIYSGYSLLFINGNNRAHGQDLGTLGSCL
PRFTTMPFLFCNTDNTCRYASRNDYSYWLSTAEQLPGSMPLISGDSLNSYISRCSVCEAR
ANVIAVHSQTSDIPDCPSGWDSLWFGYSFVMETGVGAEGSGQPLASPGSCLENFRKIPFI
ECHGRGTCNYYTDSYSYWLAALNPRDMFSKPKPQTEKGEFPGNLISRCRVCMKHEV
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atggaggctccgagcggtccgcggcggaggatcgtcccgccgccgcccctcgttctggtt
ctggttctgctgtgctgctccgccgctccgggacacgccgagagggtgtgtcactgcagc
ggaaagtctctatgtcactgtgacggggtcaaagggcaaaagggtgaacctggttaccat
ggatatgatggacttcctggagtgactggttaccctggatacgagggtcaccagggctca
attggagaaaagggtgaactgggacaagcaggagtttcaggactgaaaggctctcgggga
cttcctggaaaaccaggtttcccaggacctccgggactgccgggacttcccggacatgaa
ggacccctaggtcgtccaggactcccaggatgcaacgggacaaagggggatgttggttac
ccagggtttcccggggttacaggacctgtcggctttcaaggtcgaccaggactgcgaggt
gcaaagggagactcgttgttctttgacctccctctggatattaaaggagcaacaggacaa
caaggaccaaacggagtaaagggactgagtggagatccaggggaacctggcctaccagga
ccaccaggacctgccggacttcctggaagtccagggtttgcggggttaccaggagaaaag
ggtcaggagggtcccagtccagtgataccaggtccccgcggacagaggggtgatcgcggc
ccgccagggatccctggaccaaaaggaattaaactttatgctgaaggacccaaagaactg
aagggagaaccaggtgaagttggagcgaaaggttgtcatggacttcctggtttgccgggg
aaacagggggataaaggtggcaagggtgggagaggtgatcctggctcactgggtaaaccg
gggaaggatggagctccaggagagctgggagaacagggagacccagggtatcatgggtac
ctcggtcctccaggaattgaaggagccatgggagagaaaggtgatcggggtttcccgggt
cttccaggagagacggtctggatccacaccgttctgaagggccagcgcggtgtccccggg
ccccgcggacccccaggagtccaaggagaacaaggactcattggttttcctggaatgaag
ggcgtgccaggtgtggctcccactggtccaccgggcccccaggggccgcctggctcaact
ggatgcaaaggagaaatgggagagccggggcccgtcatcgtcgggcccccaggacagaac
ggaatcccgggaggtcttggagtcgacggagaacccggagaaccaggaataccagacttc
ctaccgggagacgttggttctcctggagctaaaggtctaaaaggctcagtgggattccct
ggatttagagggttggaaggacaaacgggtgtgaagggggagttgtgctttgcctgtgaa
tttgttctcggcaaccccggacctccgggtaaaccaggagagccaggtgaagatgggttg
ccaggatcagacggttttccaggacccaaaggacacaaaggagtcaaaggtgttgtagga
ctacctggtccacagggcccatttggtatccccggcctcccgggggcccccggacctgtt
ggtgaccctgggatcatgcagagagttcagcagaagggtgaggagggggaacagggggag
ccaggaccacccggtttagaggggaaagacggatctccaggatttacaggaccgaaaggt
gttctgggacagaaaggaaaccctgggcctctggggcctaaaggtgacaggggccctctc
ggggagactggtctcagaggactagtaggacagataggacctccaggaccacctggaatt
gggcttccaggaccttcgggatctaaaggcaatgtgggagtcctgggaaaccgaggagat
cctggaaaaccaggtgaaaaaggttctccaggtgaaatcataacctctccaggagatccg
ggacagaaaggagagaaaggtttacccggaaaccccggacctgaaggtggggtaggactt
ccaggtggtccaggatttgttggtccgaggggagaaagaggggatataggattctcagtc
caggggcctccaggcttcccaggggtcaaaggaatcaagggccctccaggagctccaggt
ttaccaagttttggtatcaagggacgggccggcccgtcaggccccccagggatgccgggc
cccaaggggggcagcggtattggtttcccaggccagcagggtcagtcaggcccccaggga
gaagatggctctgtggggccccaaggaaacctcggaccccaaggaacagatggagctcca
ggacctccaggacaagacggacctcccggacccaaaggtcggagtggtctggatgggtta
ctgggtgctgttggttttgttggaccatgtttgcctggacctcctggacgtgaaggagag
cctggaccaatgggcctcgtcggatttccagggatacggggccgaaagggtttgcagggt
gaccctggaaggcagggcgtgggagacccagggcctcaggggccttacggggccccagga
tttgaaggaccaacaggaccagtaggagaatttggactgaagggcctgagagggaagaat
ggggaaacaggaagcacaggttttagaggagatatgggtcctccaggagcccttgggagt
ccaggggatgacgggaaaccaggagagactggaccaccaggacccagaggtgagatgggt
gtagatgggatcagtagatctcaggggcctcctgggcctcaggggaaccgaggagaaact
ggaccaaaaggattccagacccctgtggcgatgtatggagatcctggagaccctggaaac
cctgggcccccaggtgtcactggtagtaaaggagagacaggcttcctggggccacagggc
ctcgacggcagcattggtagacctggaaatttcggcccgcaaggaccttctggagacctg
ggcagagacggggagaatggtcctcctggtccttttggacccaacgggaaccaaggagat
atgggatggccaggttttaaaggtgagaaaggtggtgcagggccttgtggggaacctgga
tcagaaggagagccaggaccaggaggacttaaaggtgctaaaggggaacaaagcccacct
ggaccaggatccaaaggatttccaggagagaaggggaatcagggattttcaggatctcca
ggtatgaaggggattccaggggacaggggaaactttggtcctccaggaaactgtggcccc
tgtggccccaaaggaaattctggacccccgggatgcagaggtcctgctgggcctcctggt
gacaagggttgtgatggttctccgggggaaagcggccctgcaggacccactggcctcaca
ggtaacaagggggctcctggagatcctggtccatctggtcccagaggaacccaggggcag
gacgggatacctggacctccaggagagaaaggagccatgggagctcctggaatcggaccc
cagggcacagatgggaagacaggtccacctggatgtgttggggagaagggtcctcctggt
gcttgtggtccacctggtcctcctggtcctgcgggaaacacagggtgtcacggtgctcct
ggcccccctggtcctcctggttggccaggcacggagggagcctgcactcaaggagccaaa
ggagaaattggagtcgccggacaacgaggacccaaaggtccacagggctttcggggtcct
cctggtcctccaggtcctggttttaaaggagataagggatctaaaggagctacaagttgc
caagggccatctggttcccgtggtgaccctggccctcgaggcaacccgggtcaagaagga
ccaccaggtccacgtggactaaaaggccagatgggagacactggtgtcacaggacctgtt
ggtatgaagggggaggaaggaccatctgggaacgagggcttacaaggagctccaggacta
cctgggaggagaggcaagagagggcaggacacaaccagggaggtggtgttagtgcctgga
gacccaggctcacctggagaaaagggaaacccaggagagaaaggaccaccaggggcccaa
ggaacacctggaggtccaggtttaaagggcttcatagggaatgttggtcaaagaggacga
gatggtcttcctggattgaaaggggatcagggagacccaggactccatggagcaaaaggt
atcgcaggtccacgaggtccggtgggttttaaaggtgctaaaggtgttaaaggtcgatcg
gattcctgcacagatgcaaaagaggtcaacggatttctgttcaccaaacacagccagaca
atcttaatcccagaatgccctgcaggttcaactcagatatacagcggctactcgctgctg
ttcatcaatggtaacaaccgcgctcacggacaagacctggggacattaggtagttgttta
cctcgctttaccaccatgcccttcctgttctgtaacactgacaacacctgtcgctacgcc
tcgcgcaacgactactcctattggctgtccaccgctgaacagctgccaggcagcatgccg
ctgatctctggggattcactgaatagttacatcagccggtgttctgtatgcgaggccaga
gccaacgtgatcgctgtccacagtcagaccagcgatattccagactgtccctcgggctgg
gactctctctggttcggatactccttcgtcatggaaactggagtgggggcggaggggtca
ggtcagccgctggcctctcccggatcctgtctggaaaacttccggaagattcctttcatc
gagtgtcacggcagaggaacctgcaactactacaccgactcgtacagctactggctggct
gctctcaacccccgcgacatgttcagcaaaccgaagcctcagactgaaaaaggagagttt
cccggcaatctgatcagccgctgtcgagtctgtatgaagcatgaagtatga
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