Sander lucioperca (pikeperch): 116055972
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Entry
116055972 CDS
T07345
Symbol
uimc1
Name
(RefSeq) BRCA1-A complex subunit RAP80 isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116055972 (uimc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sluc03400
]
116055972 (uimc1)
DNA repair and recombination proteins [BR:
sluc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
116055972 (uimc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAP80_UIM
Motif
Other DBs
NCBI-GeneID:
116055972
NCBI-ProteinID:
XP_031163919
Ensembl:
ENSSLUG00000025006
LinkDB
All DBs
Position
13:complement(29667975..29696202)
Genome browser
AA seq
1051 aa
AA seq
DB search
MSTDVLAPFSQERTRMALRKQILKDASDVPSGSQQIGENTQEDEALDDRDDNDFSPSLQL
SSSRQKRKRERENKSKPKEMTEEEMMDLALRLSEKEASAAAFRQQQEEEAMMKAIQESMV
SPTQPCPPPQSQSLLTDAGALLRLCSRRKLVYSNGKTASAVDQGASEDVCTPETGLNRRA
KGTGDESNNRNKKRKRKEGSPLLEMPDSQASPCSSECISVPLDSPLSSDSTQIEDSQLQK
SPVFPSTGYRAEVHVPRLSQNLLETYRTSGFVLCSQDSCTSTRTSPPAQPTSPTFPKSPT
RSNNLTLSKSPVFSETDQGEDEETEQAPEYFISPVFGRNTQHETSPSACQPQVGVCNSGF
TCSSQESLTSSVRSASRRPKSPVFPKSPGLPRNPPPPERSATCESPVFSEADGGQTEQSH
GYCASPVFGMTGRRRRQSHLDEPKPSVSPSAAELIGSDSDGDSTVTGDPSQSLAQGSKTD
HSQDASFKKPSESDDAEEELNEISKDWNSAATELTSDMVLRWSDEDEDVTPVGSPSPVFP
EERPVHQGGSQAASASPELNCRPSNSSTSTGRQQLSTTEREPRPISSQGAVSRASAPPGE
PAGGPMVHYYWGVPFCPRGLDPDKYTQVILAQMEVYEKSLKQAQRCLLRKAEWGEAVLPQ
PEKSPSPESPPESPQQFVTRRRGLRLRDKQLSEAAESPPAEAKDEEEDKKKEEEERESKE
EKNEEREEEGQDTDDCEVCPETQLSDDDRTQDLMMATDAGAESDCKMSPELPEVEMILPN
DSPAEQELQPEEEMEVEVDAPVDRKTKGNIPVNSSHVRGQRVRKEEVEEDGEDPDVEEIE
DPRLKRSTSPELEPAGVTQSPKTKVDCPICQGSFPVMQIEMHAAFCDGEVAVVDERRHEK
NCFQVSLKSLRKRTRRAEVTAEETNEPSNINSYEKCFICQKAVPLKDYSRHTEFCLQRQK
SKTAAKGNLLSALEQTESRGPEAGPSGSKLQPGEVIDLRDDDDEEDEEGGVSTLRISNSP
IRSFTPISEASGCLIDFKKQHRAKTLRQRRR
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccgatgtcctcgcgccgttttctcaggagaggaccaggatggctctaaggaag
caaatactcaaggatgccagcgacgttccctctggaagccaacagattggcgaaaacaca
caggaggacgaggctctcgacgacagagacgacaatgacttctcaccatcgcttcagttg
tcatcatcaagacaaaaacgcaagagagagagggaaaacaaatccaaacccaaagagatg
accgaggaggagatgatggacttggctctgcgtctgagtgaaaaggaagccagtgccgct
gcgttcagacagcagcaggaggaagaggccatgatgaaagccatccaagagagtatggtc
agcccgacccaaccgtgcccgccgccccaaagtcagagcctgctcaccgatgccggagct
ttgctcaggctctgctctcgccggaaactcgtgtactcaaacgggaagacggcgtctgcc
gtcgatcagggagcatcggaggatgtctgcacaccagagacaggcctgaaccgaagagca
aaaggaactggagatgaaagtaataacaggaataaaaagcggaaaaggaaagaaggaagt
cctctgctggagatgccagactctcaggcttcaccctgcagctcagagtgtatctccgtg
cctctggactcgccactgagctctgactcgacccagatcgaagattctcagctccagaaa
tcccccgtcttcccctccactggctacagagccgaggttcacgtcccccggctgagccag
aacctgctggaaacctacagaacctcagggtttgtgttgtgctctcaggacagttgtacc
tcgactcgaacgtctccgcctgctcaacccacgagcccgacgtttcccaaaagccccaca
cgctccaataacctcactctgtccaagagccctgtcttctcagagactgatcagggagag
gatgaagagacggagcaggcgcccgagtattttataagtccagtgtttggcaggaatact
cagcacgagacgtctccaagtgcctgccaaccccaggtcggtgtctgtaactcagggttc
acgtgctcttctcaggagagtttaacctcctctgtgaggtcggcatcccgtcggcctaaa
agtccagtattcccaaaaagccccggccttccccggaacccccctccccctgaaagatca
gcaacctgtgaaagtcctgtattctcagaggctgacggaggacagacggagcagagtcat
gggtattgtgcaagcccagtgttcggcatgactggacgacgacgacgacagagtcacctc
gatgagccgaagccctctgtgagtccttccgctgcagagctcataggttcagacagtgac
ggggattcaaccgttaccggggatccatctcagagtctggcgcagggcagcaagactgat
cacagtcaagacgccagctttaagaagccatctgagtcagatgatgcagaggaggagctg
aatgaaatatccaaagactggaactcagccgcgacagagctgaccagcgatatggtgctg
cgctggtctgacgaggacgaggacgtcacgccggtgggctctcccagcccggtcttccca
gaggagagacctgttcatcagggaggcagccaggctgcttcagcttccccagagctgaac
tgcagaccttctaactcttccacatccaccggccgacagcagctttccaccacagagcga
gaacctcggccaatcagcagtcagggagcggtcagcagggcgtctgccccgcctggggag
cctgcaggtgggccaatggtgcactactactggggggttcccttctgtccacgaggcctg
gacccagacaaatacacacaggtgatcttggctcagatggaggtgtatgagaagagtctg
aagcaggctcagaggtgtctgctgaggaaggctgagtggggggaggccgtcctgccgcag
ccagagaaatctccttcacctgagtcgcctcctgagtcacctcaacagtttgttactcga
aggcgtggcctcagactgagagacaaacagctgtctgaagcagcagagtctcctccagct
gaggcaaaggatgaagaagaagacaaaaagaaggaagaggaggaaagagagagcaaagaa
gagaagaatgaggagagggaagaagaaggacaggataccgatgactgtgaggtttgtcca
gaaacccaactgagtgacgacgacaggacgcaagatctgatgatggcgactgacgctgga
gcagagtctgactgtaaaatgagtccagagctgccagaggtcgagatgattctcccaaat
gattctccagctgaacaggagctgcagccggaggaggagatggaggtggaggtggacgcc
ccagtggacagaaagacgaagggaaacatccctgttaacagcagccatgttagaggacaa
cgtgtgagaaaagaggaggtagaggaggacggcgaggatccagatgtggaggagatagag
gatccacggcttaaaaggtcaacgtctcctgaactggaaccagccggtgttactcagagc
cccaaaaccaaagtggactgtcccatctgtcagggctctttcccggtgatgcagatcgag
atgcacgctgcgttctgcgatggggaggtggccgtcgtggacgagaggaggcacgagaaa
aactgcttccaagtgtcgttgaagtcactcaggaagagaacaaggagagcagaggtgact
gctgaagagactaacgaaccctccaacattaacagttatgagaaatgtttcatctgtcaa
aaagctgttccgctgaaagactacagccgacacacagagttctgcctccaacggcagaag
tcaaagactgcagcaaagggaaatctgctgtcagctctggagcaaaccgagagcagaggt
ccggaggccgggccgtctggatccaaactccagccaggagaggtcattgatctgcgggat
gatgatgatgaagaggacgaggaaggcggcgtttcaacactacggatcagtaactctccc
atcagatccttcactccgatctcagaggccagcggctgcctcatcgacttcaagaaacag
catcgagccaagacactgcgccaaagacgaagatga
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