Sander lucioperca (pikeperch): 116056045
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Entry
116056045 CDS
T07345
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116056045 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116056045 (ddx46)
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116056045 (ddx46)
Spliceosome [BR:
sluc03041
]
Complex A
U2 snRNP components
U2 related factors
116056045 (ddx46)
Complex B
116056045 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
116056045
NCBI-ProteinID:
XP_031164020
Ensembl:
ENSSLUG00000016913
LinkDB
All DBs
Position
13:complement(34463533..34476690)
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AA seq
1066 aa
AA seq
DB search
MGRESRYVRNIRHYRKRSASRGRSGSRSKSRSPDKRSKKDDRDRNRRERSRSRDRRRSRS
RDRKRVRRSRSRERRRSRSRDRRRSGSRSRARRSRSGSPSKSRRPDESRSNEKDNIDPLS
DKKKIKEEKEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKRELEEM
KQGKKWSLEDDEDDDEDVSAPMEGDDDEDGEEKEETKEKEITEEKKEEGEKEEETPMVQQ
AEEDDVDPLDAYMEEVKQEVKKFNMGAMKGNDKKGAMTLTKVVTVVKTKKGPNTHKKKGE
LMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHGKIQYEPYRKNFYVEVPELA
RMSPEEVNVYRLELEGIAVKGKGCPKPIKTWVQCGVSMKILGAMRKHGYEKPTPIQAQAI
PAIMSGRDLIGIAKTGSGKTIAFLMPMFRHIMDQRPLEESEGPISIIMTPTRELALQITK
ECKKFSKQLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRV
TYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILAKPIEVQV
GGRSVVCSDVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADTLLKDLMKAS
YPCMSLHGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDY
VHRAGRTGRAGNKGFAYTFITEDQVRYAGDIIKALELSGSPVPSELERLWASFKDQQKAE
GKTIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNS
KKRVKDLSAPGSATGAAGSAAATSAAPGGLPGLGPPSAGNIQKLQMAKMLAIKINAQKNL
GAEAQDVMQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEEQRAAEQ
AETIKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERK
IYLAIESANELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtcgaggtatgtccgaaatatcagacactacaggaagcgttctgcgtct
cggggacggtcgggtagtcgatcaaagagtcgctccccggacaaacgctccaagaaagat
gaccgagaccgaaacaggagggagcggtcacggagccgggaccgccgcaggtcccggtcc
agggacagaaaacgagtcaggcgctcccggagcagagagcggaggaggtccagaagcaga
gacaggaggaggtcgggcagcaggagccgagcccgcaggtcccgatctggtagccccagc
aagagcaggagaccagatgagtccaggagcaatgagaaagacaacattgatcctttatct
gacaagaaaaagattaaagaagagaaagaggatgagaaggttgaggatcaagactttgac
caaaacaagctggaggaggagatgaggaagaggaaggagcgagtggagaagtggagggaa
gagcagaggaagaaggccatcgaaaacatcggagagatcaagagagaactggaggagatg
aagcagggcaagaagtggagcctggaggatgacgaggatgatgacgaggatgtttcagct
ccaatggagggagacgatgacgaagatggggaagagaaggaggagacgaaagagaaggag
ataacggaggagaagaaggaggagggtgagaaggaggaggagactcccatggtgcagcag
gcggaggaggacgacgtggatcctctggacgcctacatggaggaggtgaagcaggaggtg
aagaagttcaacatgggagccatgaaaggaaatgataagaaaggagcaatgacattaacc
aaagtggtgaccgttgttaaaaccaagaaaggacccaacactcacaagaagaagggggag
ctgatggagaatgaccaggatgctatggaatactcgtcagaggaggaggaggtggatctg
cagacggctctgactggcttccagaccaaacaaaggaaggtcctagagcccgttgaccac
ggaaagatccagtacgagccgtaccgcaaaaacttctatgtggaggtccctgagcttgcc
aggatgagtccagaagaagtgaacgtgtacaggctggaactggaaggcattgctgttaaa
gggaagggctgtcccaaacccatcaagacctgggtgcagtgtggagtgtctatgaagatc
ctcggtgctatgaggaagcacggctatgagaagcccacccctatccaggcccaggccatc
cctgccatcatgtcaggccgagacctgattggcatcgctaagaccggcagcgggaaaacc
atagccttcctgatgcccatgttccgacacatcatggaccagaggcccctggaggagtct
gagggaccaatctctataatcatgaccccgaccagagaattggctctgcagatcaccaag
gaatgtaagaagttctctaaacagctgggactcagggtggtgtgtgtttatggaggcact
ggcatcagcgaacagattgctgagctgaagagaggagctgagatcatcgtgtgcacacct
ggaagaatgattgacatgttgggggccaacagcggtcgtgtcacaaacctgcgcagagta
acatacgtggtgttggatgaagcagacaggatgtttgacatgggcttcgagccacaggtg
atgcgtattgtggacaacgtgcgtccagaccgccagacggtcatgttttcggctaccttc
cccagagccatggaggccctggctcgtaggatcctggccaagcccattgaggtccaggtg
ggaggccgcagcgtcgtctgctctgatgtggaacaacacgtgctggtgattgaggaggac
aagaagttcctgaagctgctagagattctgggtcactaccaggagaagggctcggtcatc
atctttgtggacaaacaggagcatgcagacacactgctaaaagacctgatgaaagcctcg
tacccctgcatgtcactgcatggaggaattgaccagtacgacagagacagcatcatcaac
gactttaagaatggagcatgtcgcctgatggtggccacctctgtggcagccagaggcctg
gacgtcaagcagctgatcctggtggtcaactacaactgtcccaaccactacgaggactac
gtccacagggctggacgcacaggcagagcaggcaacaagggcttcgcctacaccttcatc
acagaggatcaggttcgctatgctggggatatcatcaaagctttggagctctccggctct
cctgtcccatctgaactagagcggctttgggcctccttcaaagaccaacagaaagcggag
ggtaagaccatcaagagcagcagtggcttctcaggaaaaggctttaagtttgatgaaaca
gaacacgcattggcgaatgagagaaagaagttgcagaaagctgctcttggactgcaggac
tcagatgatgaggacggagccctggatattgaggagcaaatcgagagcatgttcaactcc
aagaagagggtgaaggatctgtctgctcccggctcggccaccggtgctgcaggatcagct
gccgccacatcagctgccccaggcgggctgccaggcctcggacccccatctgctggtaac
atccagaaactgcagatggccaagatgctggcgatcaagatcaacgctcagaagaacctg
ggcgcagaggctcaggatgtgatgcagcaggccaccaacgccatcctgcggggcggtacc
atcatgacaccctctgtctcagccaagaccatcgcggagcagctggcggagaagatcaac
gccaagctgaactacacccccgtggagaagctggaagaggagcagcgggcggctgaacag
gccgagaccatcaagagatacgaagaggagctggagataaacgacttccctcagacggcc
cggtggaaggtgacgtctaaagaagctctgcagaggatcggtgaatactctgaagccgcc
atcaccatcagaggaacctatttccctccaggcaaagagcccaaggagggagaacgcaag
atctacctggctattgagagtgcaaatgaactggctgtgcagaaagccaaaacagagatt
acgcgattaatcaaggaagagctcatcagattacaaaattcctaccagccgacaagcaaa
ggccggtacaaagtgttgtag
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integrated database retrieval system
