Sander lucioperca (pikeperch): 116056290
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Entry
116056290 CDS
T07345
Symbol
ushbp1
Name
(RefSeq) LOW QUALITY PROTEIN: colorectal mutant cancer protein
KO
K21881
Usher syndrome type-1C protein-binding protein 1
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
sluc03037
]
116056290 (ushbp1)
Cilium and associated proteins [BR:
sluc03037
]
Primary cilia and associated proteins
USH complex and associated proteins
116056290 (ushbp1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USHBP1_PDZ-bd
DUF7653
APG6_N
ANIS5_cation-bd
RILP
Polo_box_2
Motif
Other DBs
NCBI-GeneID:
116056290
NCBI-ProteinID:
XP_031164335
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Position
11:complement(12329019..12340604)
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AA seq
699 aa
AA seq
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MEDSCLVRCDSLDAGSGSDRELMTSIDHITLDPEGSEPTANLEPSPAELAQCEADVGTLL
NIIAELNKKMGSLKAPSEPGDLRPPGPSRPLVPDLLSHRVARSSPERKTASAPLQPPLND
RGGGGVVWTKLQAVLTSVEDSISCKRSWAAPITASDQDKHREHLRAAQESWVKATQILEE
MEIEFGISCPPGLPKDQYPEAILDLEKRDAALRSTFQSHQEELERAQSTVSQMEEEKNKL
VGLHKAWRSGSRSPSYRPTAGALSPDWASPPFPGSPLLYRRAARAVTPLSVGEDGSPVGS
GNSCSPCRSPISLDSETERLNRCIERLRARNERLTAALERTKGESEQISITLNRLEANCS
ALQMALSYCEECEEAYSELLSLYDAKKQHSIPLQTDSAGAVGDSQQPDSPSAQLIKMGTE
ELSTSFSTAGVTEGTETQSHTGHRSGHSLPVTHRTPELVGREAVLRQQIEHLKRERAAIC
LPKPSPGSRGGHVTKDNAKPPDTKKEKASLFYELISVREEMSDLRALIRLKEKELRCLEW
GFMAQKAQESAGTFAPESLREEMEDRKTEQQKLCENGAELGNDGDIADARTRPILKELQA
VLQREQALKKRLALVQDSLNTALSDSTPHRRDNGEQIARLTQAHSKALSSYRQIRRKYRE
QVWRLEQKVAAMTESDHYQSGAQKAAGEALEWRREETVL
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggaggattcctgtctggtccgatgtgacagcctggatgctgggtcagggagtgacagg
gagttgatgacctccatcgaccatataacccttgaccctgagggctctgagcccacagca
aacctcgagccttcgccagcagaactggctcagtgtgaggctgacgtgggcacgttgctt
aacatcattgctgaactgaacaagaagatgggctcattaaaggcaccaagtgaaccagga
gacctgagaccaccaggaccatccaggcctctggttccagacctcctgtcccacagggtg
gccagaagcagcccagagaggaagactgcctctgctccactccaacctccactgaatgac
agagggggcggtggtgtagtgtggactaaactccaggcggttttaacgtcagtggaggac
tctatcagctgtaaaaggtcctgggctgcccccatcacagcttctgatcaggataagcac
agagagcatctgagagcagcccaggagagctgggtcaaggccactcagatattggaggag
atggaaatagagtttggaatttcatgcccaccaggcctgccgaaggaccagtatccagag
gccatcctggatctggagaagcgagatgctgctctcagaagcacctttcagagtcaccag
gaggagcttgagagagcacaaagcaccgtcagccagatggaagaggagaagaacaagctg
gtcggtctccataaagcctggaggtcaggcagtcgctctccttcctatcggcccaccgca
ggggctcttagtccagactgggcttctcctcccttccctggttcaccgttactctacaga
agagcagccagagctgtaacacctctgtctgtgggtgaggatggttctccagtaggctct
ggtaactcatgtagtccttgtcgcagccccatcagcctggactctgagacagaacgactg
aacaggtgcattgagcggctgagggccagaaatgaacggctgactgcagctctggagcga
acgaagggagagtccgaacagatcagtattacactaaacagacttgaggctaactgctct
gccctgcagatggctctcagctactgtgaggagtgtgaagaggcctacagcgagctgttg
tcactttatgatgccaagaagcagcatagcattcctctgcagacagactcagcaggggcg
gtcggtgacagccagcagccagacagtccgtcagctcagctcataaaaatgggaactgaa
gagctgtccacttccttctcaacagcaggagtcacagaggggacggaaacacagagtcac
acagggcacaggtcaggtcactcactacctgtaacccacaggacacctgagctggtgggg
cgagaggctgttctccgtcagcaaattgagcacctgaagagggagcgggcagccatttgt
ctacctaaaccgagtccaggatcaagagggggacatgtgactaaagataacgccaaacct
cctgatacaaaaaaagagaaggcttccctcttctatgaactcatctctgtcagggaggag
atgtcagatctgcgagctctaatccgcctcaaggagaaagagctgaggtgtttggagtgg
ggttttatggcccagaaggcccaggaatcagctggaacttttgctccagaaagcctcaga
gaggagatggaggatcgtaagaccgaacaacagaagctctgtgaaaatggggctgaactg
ggtaatgatggggacatcgctgatgctagaaccagacccattctgaaagagctgcaggct
gtcctgcaaagggaacaagcccttaagaagagactggctttagtccaagactcacttaac
acagctctgtcagacagcaccccgcacaggagggacaatggagagcagattgctcggctc
acacaagctcacagtaaagccttgagttcgtaccggcagattcgcaggaagtaccgggag
caagtgtggaggctggagcagaaagtggcggccatgacggagagtgaccactaccagagt
ggagctcagaaagctgcaggggaagccttggagtggaggagggaagagactgttctgtga
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