Sander lucioperca (pikeperch): 116056354
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Entry
116056354 CDS
T07345
Symbol
wdr33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116056354 (wdr33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116056354 (wdr33)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116056354 (wdr33)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
eIF2A
Beta-prop_Vps41
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_WDR11_2nd
Ge1_WD40
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
116056354
NCBI-ProteinID:
XP_031164389
Ensembl:
ENSSLUG00000015184
LinkDB
All DBs
Position
9:complement(20055066..20095724)
Genome browser
AA seq
1098 aa
AA seq
DB search
MATDIGSPQRFFHMPRFQHQAPRQVFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRHLGNRLWQRDHRDFRAIQPDAACYNDMVPPVGMLNNPMNAVTTKFVRTSTNKVKC
PVFVIRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
TGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGMEYDDMDLNSVASIPGMGIPEQLKAAMEQEQSSKEAAPEVEMSIPGLDWGMDE
VMGKDSKKVPQKKVPYAKPIPAQFQQAWAENKVPMMPPGGELSKDRKVEQKVDGKKKTQA
EMEQEMAALQYTNPMLLEQMKMNQMNSDGNMGPPQGQGPMPPFPGPGGPGGPMPPGQQGF
PPNMPPQQMPNNMGPPMGPGGMQPPFMPPGQHSGQMGPPSGPQPHQGPPQGMMGPPDMQG
PQGMQRHPGPPRNMGPQGPHGMGPRGMPHGNMMGPPPRGMGPRDPQGPPPQGGMMPPQGN
MMGPQGGMMGPPPRTHGNAPNNYGMGPPGGMHGPPGNMQGPPGNMQGPHGNMQGPPGNIQ
GPHGNMQGPPGNMQGPPGNMQGPPYMQHQGQNSGPMMHGMGQQGPNSKDPRGPPPNHHMG
PPDRQGPAGPDQGSGQYWGDNQQGRRGPQDFDGGQDFHSRGEEGWRPGPGPGPGPGPGYQ
GGGGGGHRGGGPRGGGGNGGNWGPDERFTGGEFRGRRDDRFRGGPGRPGSRGYPEEYGGP
EEGFEGPDETIGRGYGGRGRPPRGGGPPRGGGGHDGYRDGQMHDGSSPAGRERSSSLQGM
DMASLPPRKRPWQDGPGTGDPREREAPGADGGYPPQREDGGYGPPVRGGRGGWGPGGPGP
RRGGPAPRGPPRGGVRGR
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagacatcggctcgccgcagcggttctttcacatgccgcgcttccagcaccag
gcgccacggcaggtgttctacaagcggccggacttcgcccagcagcaggccatgcagcag
ctgaccttcgacgggaaacgcatgaggaaggccgtgaaccgtaaaaccatcgactacaac
ccctcagtcatcagacacctcgggaaccgtctgtggcagcgagaccatcgagacttccga
gccatccagccagacgcagcgtgttacaacgacatggttcctcctgtcggcatgttgaac
aacccgatgaacgccgtcaccacaaagtttgtccgaacctcgaccaacaaagtcaagtgt
cccgtgtttgtgatcaggtggacgcctgaaggccggcgtctggtcaccggggcctccagc
ggagagttcactctgtggaacggactcaccttcaactttgagaccattttacaggcccac
gacagtccggtccgggcgatgacctggtctcacaacgacatgtggatgctaacggcggac
cacggcggctacgtgaagtactggcagtccaacatgaacaacgtcaagatgttccaggct
cacaaggaggccattagagaagccagtttttctccgacagataataaatttgccacctgc
tcagacgacggcacggttcggatctgggacttcctgcgctgccacgaggagaggatcctc
cgaggtcacggtgcagatgtgaagtgtgtggactggcatcccactaaaggtctggtggtc
tccggcagtaaggacagccagcagccaatcaaattttgggacccaaagacgggacagagt
ctggcgacactacacgcccacaagaacacggtgatggaggtgaagtggaacctgaacggg
aactggctgctgacagcgtcacgtgaccacctgtgcaaactgtttgacatcaggaacctg
aaggaggagctgcaggtgttcagaggacacaagaaggaggccacagctgtggcctggcat
ccggtccatgaaggtctgtttgcgagcggcggctctgacggctctctgctcttttggcac
accggggtggagaaggaggtaggagggatggagatggctcatgaggggatgatctggagt
ctggcctggcacccgctgggtcacatcctctgctccggctccaacgaccacaccagtaag
ttctggacgaggaaccggcccggtgataagatgagagatcgctacaacctgaacctgctg
ccagggatgtcagaggacggcatggagtatgacgacatggacctgaacagcgtggcgtcc
atccccggcatggggatccccgagcagctgaaggccgccatggagcaggagcagagcagt
aaagaggcggctccagaggtggagatgtccatccccggtctggactggggcatggacgag
gtcatgggtaaagactccaagaaggtcccgcagaagaaagtcccgtacgccaaacccatc
ccagcgcagttccaacaggcctgggcagagaacaaagttcccatgatgcctcccggtgga
gaactgtccaaagaccggaaggtggagcagaaggtggacgggaagaagaaaactcaggca
gagatggagcaggaaatggcagctttacagtacaccaaccccatgctgctggagcaaatg
aagatgaaccagatgaactcagacgggaacatgggccccccacagggacaaggccctatg
ccccccttccctggccctggaggtcctgggggccccatgcctcctggccagcagggcttt
cccccaaacatgcctcctcagcagatgcccaataacatggggcctccaatgggccccgga
ggcatgcagcctcctttcatgcctcctggacaacacagtgggcagatgggacccccttct
ggaccccagcctcaccaggggccccctcagggcatgatgggaccaccggacatgcaagga
ccccaaggtatgcagagacaccccggcccgcctagaaatatgggcccacaagggccacac
ggtatgggacccagagggatgcctcatgggaacatgatgggcccccctcctcgaggaatg
ggtcccagggatcctcagggacccccacctcagggtggcatgatgccacctcaggggaac
atgatgggaccgcagggcgggatgatggggccgccacccaggacacacggcaacgcgccg
aacaactatgggatggggcctccgggagggatgcacgggcctccaggaaacatgcagggg
ccccctggtaacatgcaagggccccatgggaacatgcaaggacccccaggaaatatacaa
ggaccccatggaaacatgcaaggacccccaggaaacatgcagggacccccaggaaacatg
cagggacctccatacatgcagcaccagggtcagaactcggggcctatgatgcacgggatg
gggcagcaggggcccaacagcaaagaccctagggggccaccgccgaaccaccacatgggc
cctccagaccggcagggtcccgcggggccagaccagggctcgggtcagtactggggagac
aaccagcagggccgacgtggtccacaggacttcgacggaggccaggacttccacagccga
ggagaggagggctggagacctggacctggacctggaccgggacctggaccgggataccag
ggcggaggaggggggggacacagggggggagggccccgaggtggggggggcaacggaggg
aactggggccccgacgagaggttcaccggcggagagttcaggggacggagagacgacagg
ttcagaggcggccccggccggcccggcagtcgaggttaccctgaagagtacggcggccca
gaggagggcttcgagggtccggacgagacgattggtcgaggctacggaggccgagggagg
ccgcctcgggggggcggcccacccagaggggggggaggtcacgacggttatcgggacggt
cagatgcatgatgggtcgtctccagcgggccgcgagcgctcgtcctccctgcaggggatg
gacatggcgtctctgccgccgcggaagcgtccgtggcaggacgggccgggaaccggagac
ccccgagagagagaggcccccggagccgacggaggttaccccccccagagggaggacggg
ggctacggtccgcctgttcgaggcgggcgtgggggttggggtcctggaggaccgggacca
aggcggggcggaccagcgcccaggggaccacccagggggggcgtccggggccggtag
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integrated database retrieval system
