Sander lucioperca (pikeperch): 116056955
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Entry
116056955 CDS
T07345
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sluc03016
]
116056955 (rtcb)
Enzymes [BR:
sluc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
116056955 (rtcb)
Transfer RNA biogenesis [BR:
sluc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
116056955 (rtcb)
Prokaryotic type
tRNA splicing ligases
116056955 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
116056955
NCBI-ProteinID:
XP_031165210
Ensembl:
ENSSLUG00000008152
UniProt:
A0A8C9Y0Q4
LinkDB
All DBs
Position
20:21514521..21529505
Genome browser
AA seq
506 aa
AA seq
DB search
MSRSYNDELQYLDKTGKNCWRIKKGFVPNMQVEGIFYVNEPLEKLMFEELRQACGGRGGV
GGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNNPDAVVSPGGVGFD
INCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWS
LREGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYN
DYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIM
SQEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFVTTPDDLDMHVIYDVSHNIAKVE
EHMVDGKQKTLLLHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
TETFGTTCHGAGRAMSRAKSRRNLDFQDVLDKLADQGIAIRVASPKLVMEEAPESYKNVT
DVVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagttataatgatgagctgcagtatctggataagacgggcaagaactgctgg
aggattaaaaaagggtttgttccaaacatgcaggtggagggaattttctacgtgaacgaa
cctctggagaaactgatgtttgaggagcttcgccaggcctgcggagggagaggtggtgtg
ggtggattccttccagccatgaaacaaatcgggaacgtggcggcactgccggggatcgta
cacaggtccatcggtctcccagacgttcactccggatatggatttgcgatcggaaacatg
gctgccttcgacatgaacaaccccgatgctgtggtgtctccaggcggcgtcggtttcgac
ataaactgcggcgtccgtctgctgaggacgaacctggacgagggggacgtccagccggtg
aaggagcagctggcccaggcgctgttcgaccacatccccgtgggggtcgggtccaaggga
gtcatccccatgggggccaaggacctggaggaagctctggagatgggagtggactggtct
ctgagggaggggtatgcctgggccgaggacaaggagcactgcgaggaatacggccgtatg
ctgcaggcagaccccaacaaagtctcctccaaggccaagaagagaggcctcccgcagctg
gggactctgggagcaggaaaccactacgctgagatccaggtagtagacgagatctacaac
gactacgccgccaagaagatgggcatcgaccacaaaggtcaggtgtgcgtgatgatccac
agcggcagccgagggctcggacaccaggtcgccacagacgctctggttgccatggagaag
gcgatgaagagagataagatcatagtcaacgaccgccagctggcgtgcgctcgcatcatg
tcgcaggaaggccaggactacctgaagggcatggccgcggcggggaactacgcctgggtc
aaccgctcgtccatgaccttcctcacccgacaggccttttctaaagtgtttgtcacgacg
ccggacgacctggacatgcacgtcatctacgacgtctcgcacaacatcgccaaagtggag
gagcacatggtggacgggaagcagaagactctgctcctccaccgcaaaggatccacccga
gctttccccccacaccaccccctcatccccgtagactaccagctcacaggtcagccggtg
ttaatcggcgggacgatgggaacatgcagttacgtcctcaccgggacagaacaaggcatg
acggagacattcggcacgacgtgtcacggagcgggtcgtgcgatgtctcgggccaagtct
cgcaggaacttggacttccaggacgtcctggacaaactggccgaccagggcatcgccatc
cgagtggcgtcgcccaaactggtcatggaggaggctcccgaatcgtacaaaaacgtgacg
gacgtcgtcaacacgtgtcacgacgctggaatcagtaagaaggcgatcaaactgcggccg
atcgccgtgattaaaggctga
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