Sander lucioperca (pikeperch): 116057277
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Entry
116057277 CDS
T07345
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116057277 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116057277 (lsm1)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116057277 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
116057277 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
116057277
NCBI-ProteinID:
XP_031165529
Ensembl:
ENSSLUG00000025253
UniProt:
A0A8D0ATQ1
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Position
2:complement(33416845..33423993)
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AA seq
133 aa
AA seq
DB search
MNYVPGTASLIDDIDKKHLVLLRDGRTLIGYLRSIDQFANLVFHQTVERIHVGKKFGDIP
RGIFIVRGENVVLLGEIDVEKPCDAVLQQVSIEEILEEQRLQQQAKQETEKVKIAALKDR
GLSIPKADNLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactacgtaccggggacggccagcctcatcgacgacatcgacaagaagcacctggtg
ctgctccgggatggaaggactctgattggctacctcaggagcatcgaccagttcgctaat
ttagtttttcaccagacagtcgagcgcatccacgtggggaagaagtttggagacatcccc
cgaggaatcttcatcgtgagaggagagaatgtggtgctgctcggagagatagatgtggag
aagccctgcgacgccgtcctgcagcaggtctccatcgaggagatcctggaggagcagcgg
ttgcagcagcaagccaaacaggagacggagaaagtcaaaatagccgccctgaaggaccga
ggcctttccatccccaaagccgacaacttggacgaatactga
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integrated database retrieval system
