Sander lucioperca (pikeperch): 116057330
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Entry
116057330 CDS
T07345
Symbol
ptbp1a
Name
(RefSeq) polypyrimidine tract-binding protein 1a isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116057330 (ptbp1a)
03041 Spliceosome [BR:
sluc03041
]
116057330 (ptbp1a)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
116057330 (ptbp1a)
Spliceosome [BR:
sluc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
116057330 (ptbp1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
116057330
NCBI-ProteinID:
XP_031165574
Ensembl:
ENSSLUG00000018728
LinkDB
All DBs
Position
18:23145689..23161284
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AA seq
580 aa
AA seq
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MDGRLDADLYPLGSGYVPEIEGVHDISVGTKRGSDELFSSCISNGPYIMNAANGNDSKKF
KGDVRSPGVPSRVVHVRKLPNDINEAEVIGLGLPFGKVTNLLMLKGKNQAFLELNSEECA
QTMVSYYSSVTPVIRNHPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGGGMASMAI
PADAASMGGAGSQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALIQ
YADGLTAQHSKLSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPNADSQP
SIDHQTMAAFAAPGLISASPYGGAHAFPPTFAIQQASGQYYTVQGLSMPGMPSLASLGVG
HGGMAAAAAAASRLGLSGLTASGGHHVLLVSNLNPESVTPHCLFILFGVYGDVMRVKILF
NKKENALIQMSDSTQAQLAMSHLNGQRLHGRAMRVTSSKHTTVQLPREGHEDQGLTKDYS
NSPLHRFKKPGSKNYSNIFPPSATLHLSNIPPSVVEDDLRRLFASSGATVKAFKFFQKDR
KMALIQMGSVEEAIESLIEFHNHDLGENHHLRVSFSKSTI
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgcctagacgctgacttgtatcctctgggatccggctacgtccctgaaatt
gaaggtgtccatgacatatcagttggcacaaagaggggatccgacgaactcttttcttcc
tgcatatccaacgggccctatatcatgaatgcagccaatggcaacgacagcaaaaaattc
aaaggtgacgtccgcagccctggtgttccgtcgcgtgtggtccatgtacgcaaactgccc
aacgacataaatgaggctgaagttattggcctgggactgccctttgggaaggtcactaat
ctgctgatgctgaaagggaaaaatcaggctttcttggaactgaacagcgaggagtgtgca
cagacgatggtgagctactactcctctgtcacccctgtcatcagaaaccaccccatttac
atgcaatactcaacccataaggagctcaagacggacaactcccccaaccaagtgcgtgca
caggcagctctgcaggcagtcaatgcactgcatggaggtgggatggcaagcatggccatt
cctgcagatgcagctagcatgggaggagcagggtcgcaaagccctgtactccgagtcata
gtagaaaatctcttctaccccgtcaccctggatgtactacaccagattttctccaagttt
ggcacagtgctgaaaatcataactttcactaagaacaaccagttccaggctctgatccag
tatgctgatggcttaacagctcagcactccaaactgtctctggatggacagaacatctac
aatgcctgctgtaccctgagaatcagcttctccaagctcaccagcctcaatgtcaagtac
aacaatgacaagagcagggattacacccgaccagacctccccaatgcggattcacagccc
tccattgaccatcagaccatggctgcttttgctgctcctggcctaatctcagcctctcct
tatggcggagctcatgccttccccccaacctttgccatccagcaggcatcaggtcagtac
tatacagtacaagggctgtcaatgcctggtatgcctagcctggcatccctgggtgtgggc
catggtggcatggcggctgctgcagcggccgctagccgcctcggcctgtcggggctcacg
gcctctggggggcaccatgtcctgttggtcagcaatctgaaccctgagagcgttacgcca
cactgcctctttattcttttcggtgtgtacggcgatgtcatgagagtcaagatcctgttt
aataaaaaggagaatgctctgatccagatgtctgatagcacacaggctcagctagctatg
agccacctgaatggccagcgtctccacggcagggccatgcgtgtgacatcatcgaaacac
accacagtgcagctgcccagagaaggccacgaggaccagggcctcacaaaggactacagc
aactcaccgctgcaccgtttcaagaagcctggctccaaaaattactccaacatcttccca
ccctctgcaacactccacctctccaacataccgccttctgtggtggaggatgacctcagg
aggctttttgccagctcaggagccacagtcaaggccttcaagttctttcaaaaagaccgc
aagatggccctgatccagatgggctcagtcgaggaggcaattgagtccctcatcgagttc
cacaaccacgatctgggagagaaccaccaccttcgagtgtccttttcaaagtccaccatc
tga
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