Sander lucioperca (pikeperch): 116057581
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Entry
116057581 CDS
T07345
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116057581 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116057581 (edc4)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116057581 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
116057581 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
CelTOS
WDR55
RMC1_N
PIN_8
Motif
Other DBs
NCBI-GeneID:
116057581
NCBI-ProteinID:
XP_031165979
Ensembl:
ENSSLUG00000025953
UniProt:
A0A8D0B2T9
LinkDB
All DBs
Position
7:complement(27393924..27429114)
Genome browser
AA seq
1397 aa
AA seq
DB search
MASNSNMDIEGATQHLRDILKLDRPGNSTDTPSGDGLRMPSFNGELNGLLGAAGLLGSTD
RSTMSNSTRPISTDLSSAQECQIICLSGDDGSTCIPITSNNVEIVASQDSSINSKARGSN
KVKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVGFAERSLLKGFTG
AVTDLAFAHLDSSLLGCVDEAGNLMVWQITCTGNKILDQVVVHIRRPEDSPLNSHRRLIW
CPFIQDENEENQDDTSQTLALLHEDMAEVWDLEVLRANNSSWPVDATDLKEGLITIKGHN
QRVSEGALSPDGTVLATASHDGYIKFWQIYIEGVQDKPRCLHELRPHGGRPLSCLLFCDN
HKRQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDLFNSSVLPSLKASLDLS
AQYLILTDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVRDVTHSRLRHTEV
LPAEEESESMTTEGTQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNLGSSSTIFLPHSD
SQDGFAGFSDHLTDQSSDKDSGSGSQTDLRKIPSLPAPTDFLSNSGASSGTKLMTPDAFM
TPSTSVPASPGSSASSLTVVTAISSNSDSTNRAIDDVSQSPNRAENNGSSSSSSSSLALS
NSTSSPRASSVVLMPGLENLQALASPIGPLTLDSPQVLDSPLLPPLASPTRARSPDVISS
ASTAMSQDMPEIASQTLQLQRGLVSSLEPLPLSALQTDSMASAASALHLLTSPRTANNNS
LLALELGGADGPVGGAVESEPRLSHTPSLLENALSQENPGVGGGSSDVSVSHTPWPAAPD
ITRETRNSLRDNGLGDCSREELKDRHLSSPYHRRSYHLTQNDSQDAGAEQSDPDDEVASL
ASSSGKSGSRSSHRLPVKDWKTSPRGSPKVKRKTKKDDSESSQSRQMDSVQMNAEVQDEL
LMLLRSQQRELTELRGQIEAMQSTIMAQVEHVLTNHQEQEQRRLERVLSESQNHQQQLQE
QLSQQLSHTLSSVLTNRMDKVIREEMKKTVPQSISKSLEPVTGQLSNTIAAKLTAVEVTL
KENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQGIVLPVFERGCQSMFQQINDSF
KQGTQEYIQQLETHMKNRKQKEQETRDPMIGQLQQMTDSFQSSTDQLANNITANVRAEVQ
HQIQMMVGNLQESILSHVQRIVKGEVSQAMKEQQAVVTSSIMQAMRSAASTPVPTAHLDY
QTQQANILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSL
IQQLSSNLTTRSELKISYLEDAVMNLDHSDPLTRDHMSSVLAQVRPKLFAFLQQDPHSPL
SKRARRLMMMLQGLVSH
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaattctaatatggatattgagggtgcgacccagcatctccgggacatcctc
aagctcgaccgtcccgggaatagcaccgatacaccatcaggtgatggtctgagaatgcca
tcttttaatggagagctgaatgggttattgggagcagcaggtcttctaggaagcactgat
cggtcaaccatgtcaaattccaccagacccatctccacagacctcagcagcgctcaggag
tgtcagataatctgcctttctggcgacgatggctccacctgtatccccatcacctccaac
aacgtggagattgtggcaagtcaagactccagcatcaacagcaaggctcgcggcagcaac
aaggtgaagattcaacccgttgccaagtacgactgggaacacaagtattattatggcaga
ctgatagccgtgtccaactccttcctggcgtatgccatcagaggagccaacaaccatgca
atgattagagtcctgagtgtgggttttgctgagcgatccctactgaagggcttcactgga
gctgtcacagatctggcttttgcccacctcgactcctccctgttgggttgtgtagatgaa
gcgggcaacctgatggtctggcagatcacctgcactggaaacaagatacttgatcaggtg
gtggttcatatccgacggccagaagactccccactgaactcccaccgtcgcctcatctgg
tgcccgttcatccaggatgaaaatgaggagaaccaggatgacaccagccagaccttagcc
ctgcttcatgaagacatggctgaggtgtgggacctggaagtcttgagagccaacaacagc
agttggcctgtcgatgccacagacctaaaagaaggcctcatcacaatcaagggacataac
cagcgagtcagtgaaggggccctgtctccagatggaaccgtgttagccacagccagccat
gatggatacatcaagttctggcagatatacatagaaggggtacaggacaagccgagatgt
cttcatgagctgcggcctcacggaggacgtcccctctcttgccttcttttctgtgataac
cacaaaagacaggaccccgaggttcctttctggcggttcctgataactggagcggatcag
aaccaggaattaaaaatgtggtgcactgtttcttggacctgtctacagaccatcaggttt
tctccagatctgttcaactcatcagttctgccaagtctaaaggccagtctggacctctct
gctcagtatctcatcctcaccgacgtacagaggaaggttctgtatgtgatggagctgcgg
caggatctggagaaaggaaaggccagtttcacagcagtatccgagttcctgctgacccac
cctgtgctcagctttggggtccgggatgtcacccacagccgattgcgacacacagaggtc
ctccctgcagaggaggagagtgagagtatgacaacagagggcactcaaggaccaacagag
tccaagtctggcatccaaattaaactctactgtgttcacaccaagagtctgcaggatgtc
cagatctggtttcagcccaacttgggttccagctcaacaatcttcctgccccattctgat
tcccaggatggttttgcagggttttcagaccatctcactgaccagagctctgacaaggat
tcaggaagtggctcccagaccgacctaaggaagatcccatcgcttcctgctcccactgac
ttcctgtcaaactcgggcgccagcagtgggaccaagctgatgactcccgacgcctttatg
acaccaagcacttcggtaccggcatctcctggcagtagcgccagcagtctgaccgttgtg
acagctatcagcagcaactctgactccactaacagagctattgacgatgtcagccagagt
cctaaccgagcagagaacaacggcagtagtagcagcagcagcagcagtctggccctctcc
aactccaccagcagcccaagagcttcttctgttgtgctgatgcctggactggagaaccta
caggctttagcatcccctattggtcctctgacactcgacagccctcaggttctggactct
cccctcctgccacctctggcttctccgaccagggcccgctcccctgacgtcatctcctcc
gcctccactgccatgtcccaggacatgccagagattgcatcccagaccctgcagcttcag
cgtggacttgtgtccagcttggagcccctaccgctgtctgctctccagacagacagcatg
gcctctgctgcatctgccctgcacctactcacctcaccacgcacagccaacaacaacagc
ctgttggcccttgaactcggaggtgctgatgggccagtgggcggcgccgtagagtcagag
cccagactcagccacaccccatcactacttgagaatgccttatcacaggagaaccctggg
gttggtggagggtcctcagatgttagtgtcagccacacaccttggccggctgcgcctgac
atcactcgagaaaccaggaacagtctcagggacaatggtcttggagactgttcaagagag
gagttgaaggacaggcacttgagctcaccttaccatcgacgctcctatcacctcacacag
aatgacagtcaggacgctggtgcagagcagagtgaccctgatgatgaggtggccagcctg
gcatcatcctcaggaaaaagtggctctcgttcttctcacagactaccagtcaaggactgg
aagacctcaccacgaggctcgccaaaagtaaagaggaagaccaaaaaagatgacagtgaa
tcgtctcagtccaggcaaatggactctgttcagatgaatgcagaagtgcaggacgagttg
ttgatgctcctgcgtagccagcagagagaactaactgaactgcgtggtcagattgaagcc
atgcaaagcaccattatggcccaagtagagcatgtccttaccaaccaccaggaacaagaa
cagcgcagactagagcgagttctgtccgagagtcagaatcatcaacagcagcttcaggaa
caactcagccagcagctcagccacaccctcagctcggtgctgaccaacagaatggataaa
gtgattcgagaggaaatgaagaaaacggtcccacaatcaatctctaagagtctggagcca
gtgactggtcagctgagcaatacaattgctgctaagctgactgctgtggaggtcaccctg
aaggaaaatgtcagcaaggtggtcaaatccaagaacacaacagatgcaattggtcgagca
gcagcagaagccatgcagggacccatccaggcagcctataaagacgccttccagggcatt
gtgctgcctgttttcgaaagaggctgccaatccatgtttcaacaaatcaacgacagcttc
aaacaaggcacacaagaatacatccaacagcttgagacccatatgaagaacaggaagcag
aaagagcaggagacacgagaccccatgattggccagctccagcagatgactgacagcttc
caaagctccaccgatcagctggccaataacatcacagctaatgtccgggcagaggtccag
caccagatccagatgatggtgggaaatttgcaggagtctattcttagccatgtgcaacga
attgtcaaaggggaggtgagccaggcaatgaaggagcagcaggcagtggtcacctccagc
atcatgcaggcaatgaggtcagcggccagcacacctgtccccacagcacacctagactac
cagacacagcaggcaaacatcctgcagctcctccagcagggccagctcaaccaggctttc
cagcaggctctttcagcgaccgatctgaacttggtcttgtatgtgtgtgagaccatcgac
tctcagcaggtgtttggccagcacccctgccctctcagccagcctgtgctgctgtcactc
atccagcagctctcctccaacctcacaacccgctctgagctgaaaatcagctacctggag
gatgcagtgatgaatctggaccacagcgacccgctgactagagaccacatgtcctcggtg
ttggcccaggtccgaccgaagctctttgccttcctgcagcaggacccacacagcccgctc
agcaagagggcgcggcgcctgatgatgatgctgcagggtctcgtcagccactag
DBGET
integrated database retrieval system
