Sander lucioperca (pikeperch): 116059435
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Entry
116059435 CDS
T07345
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116059435 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116059435 (xab2)
03041 Spliceosome [BR:
sluc03041
]
116059435 (xab2)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116059435 (xab2)
Spliceosome [BR:
sluc03041
]
Complex B
Other components
Prp19-related factors
116059435 (xab2)
Complex C
116059435 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
ARM_TT21_C
ARM_TT21
TPR_16
NRDE-2
TPR_1
Tcf25
N_NLPC_P60
SNAP
Motif
Other DBs
NCBI-GeneID:
116059435
NCBI-ProteinID:
XP_031168367
Ensembl:
ENSSLUG00000013313
LinkDB
All DBs
Position
21:complement(6761918..6770754)
Genome browser
AA seq
848 aa
AA seq
DB search
MPSLNGKPDVLFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPSYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENTEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKDEDEDIDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLSAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVEAEERHQMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSAQMMKATTSSTVSDLAPGQMEIDDMKMLEQKAQQLAAEAEQDK
PKLKEKILFVRSDTSRSELAELSKQANPDEIDIDDEDEDEDDENQGPEEVQLEQKSVPTA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaaatggaaaacctgatgttctgtttgaggacgatgatctgccttatgaa
gaggagattatcaggaacccatactcagtcaagtgctggatgcgttacatcgaattcaaa
cagaacggagccaaatccaccctcaacatgatatatgagcgggctctgaaagagctgcct
ggcagctacaagctgtggtacaattatctgagagagagacggaaacaagtcaaagggaaa
tgtatcactgaaccaagctatgaagagatcaataattgccatgaaagggcattggtgttc
atgcataagatgcctagaatatggcttgattactgccagttccttgtgtctcaatgcaag
atcacaagaagtcggcaaacatttgaccgtgctctcagagctcttcctgttactcaacac
ccacgcatctggcctctgtatctccgctttgtgcgtaatctgcccctgcctgagactgcc
atccgggtgtaccgcaggtaccttaagctttctccagagaatacagaggaatacatagac
tacttacggtctgttggccgcttggatgaagcagctgtgcgactagcagctgttgttaat
gacgaaagctttgtgtccaaagagggcaagtctaactatcaactgtggcatgagctatgc
gacctgatctcccagaaccctgataaagtgacctctctaaatgtaggagccatcatccga
ggaggcctcactagattcacagaccaacttggaaaactctggtgctctttagctgactat
tatatcaggagtggtcactttgagaaggcccgtgatgtgtatgaggaggccatccttacg
gtggtaacagtaagggatttcacacaagtgtttgatagttacgcccagtttgaagagagc
atgattgcagcaaagatggagaccactgctgagatgggaaaggatgaagatgaggacata
gacatggagcttagactggcccgttttgagcagctgatagcccggcggccccttcttttg
aacagtgttctactgcgacagaaccctcataatgtccatgagtggcacaagcgggtaaaa
ctgtatgagggcaatccacggcagatcatcaacacatacactgaggcagtgcagactgtg
gatccgatgaaggccacagggaagcctcactctctctgggtttcctttgctaaattctat
gaggaaaatgagcagctggatgatgccaggacaatttttgagaaggctaccaaagtgaac
tacaagcaggtagatgacctttctgcggtgtggtgtgagtatggagagatggagctacgc
catgagaactatgaacaggcactgcgcatactgaggaaagctacagccatcccatccaag
aaagcggagtactttgatgcatccgagccagtccaaaacagagtttacaagtccttgaag
gtctggtctatgctggcggacttggaagagagtcttggcactttcaagtctacaaaagca
gtgtatgatcgcatcattgacctccgcatcgccacgccacagatcatcatcaattatgcc
atgttccttgaagagcacaactactttgaggaaagcttcaaggcatatgagcgtggtatt
gctctcttcaggtggccaaatgtttatgacatctggaacacttacctcaccaagttcatt
gatcgttatgggggcaagaagctggagagagctagagatttatttgagcaagccctagat
ggctgccctgccaagtttgccaagaccatttacctgttgtatgccaaattggaggaggga
tatggattggcacgacacgccatggctgtctatgaaagagcaacgcaggcagtagaagct
gaggagagacatcaaatgttcaatatctacatcaagagagcagctgaaatttacggagtc
acgtacaccagagcaatttaccagaaagctatcgaggtccttcctgatgagcatgcaagg
gacatgtgtctgcgatttgctgacatggagagtaaacttggtgagattgatcgggcgaga
gcaatttactcctactgctcccaaatctgtgacccaagggtgactgcaaacttctggcag
acatggaaagaatttgagatccgccatggaaatgaggacacgattagagaaatgctgagg
atcaaacgtagtgtccaagccacatacaacacccaggtcaactttatgtctgctcagatg
atgaaggctacaacaagctccacagtgtcagatcttgctccaggccaaatggaaattgat
gacatgaagatgctggagcagaaagcacagcagcttgctgcagaggccgagcaggacaaa
cccaaactcaaagaaaagattctctttgtcaggagtgacacctctcgcagtgagttggct
gagctttccaaacaagccaatcctgatgagattgacattgatgatgaggatgaggatgaa
gatgatgaaaaccagggaccagaagaggtgcagcttgaacagaagagtgtccccacagct
gtctttggagggcttaaagatgactga
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