Sander lucioperca (pikeperch): 116059518
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Entry
116059518 CDS
T07345
Symbol
rfx1a
Name
(RefSeq) MHC class II regulatory factor RFX1a isoform X3
KO
K09173
regulatory factor X 1/2/3
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sluc03000
]
116059518 (rfx1a)
Transcription factors [BR:
sluc03000
]
Eukaryotic type
Other basic domains
RF-X
116059518 (rfx1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX1_trans_act
RFX_DNA_binding
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
116059518
NCBI-ProteinID:
XP_031168513
Ensembl:
ENSSLUG00000010141
LinkDB
All DBs
Position
21:complement(11848683..11862800)
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AA seq
995 aa
AA seq
DB search
MATSGYVGEIQPAAQPQGAGVSVTPGQPDASSTPATAPQFLAEIQTAVATPTVVTSTGQT
TPTDQVTTITTPKPADGSLAQSTAQTQAPQTQYVTAEIQGSPTQSGNAQSTPQYIVVTVT
EGSLHSSDSVSDSSPPPAVVQTGVPTQVVQQVQTAQQRSVVQATSQIAKTEPGTQLSVTS
LQPVHISQEFLPSTKVTALVRDNNIEEWQLQHEIRQPECQAWASADYEKECCCTPPYLPL
DLFQYYQSLYLLSVQEKEIGAHPAVTSSGPDKPPLQATTTTFQVQQQLTPVPVQHVYANQ
VQYVEGGETNYTTSTIRSSAFPYTDTPLYTQTTAAQYYEGQPTSGSSTPGTPLTVSVTAG
TTGGVSMFVAQPTSAAGGGATVVTTGGTTNGAGEGAGTNGGATGSYVIQGGYMLGSSGGA
AGNSQNYSHTARASPATVSITEGEESSVPSADKKVQWLLDNYETAEGVSLPRSTLYCHYL
LHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKAGSSLLRLMEDQ
QHLAMRQQPFSQKQRLKPVHKVEGMTNGTAAAAGAGQQQGSGQVDISTQVQQYQQFLDAS
RALPEFPDIDLQGKSLPEGIEVEHIKSFQLLYREHCEAILDVMVNLQFTLVETLWKTFWR
FSQSQAGDATLAVHDESEKRLPKSCLVLLCKYDPVLRWSRDCDNSLYQGLVEILIPDVLR
PIPSALTQAIRNFAKSLESWLTNAMMNIPEEMVRIKVTSANAFAQTLRRYTSLNHLAQAA
RAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKLTLQQQNSLEQW
AAWLDGVVSQVLKPYQQSPAFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLL
YDEYMYYLIEHRVAQAKGETPIAVMGEFASLGRGLNQLDPDKEEEEEEEEESDEEGQELS
LPSDGAVLGDESLEPPAKLARMDQRVLFTTGSADN
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggccacctcaggctacgtaggtgagatacagccagcagcccaaccccagggggctggt
gttagcgtcacaccggggcaacctgatgccagttctacccctgcaactgcccctcagttt
ctggctgagattcagactgctgtggccacacccactgttgtcacatccacaggccaaact
actcccactgatcaagtcaccaccatcaccactcccaagcctgcagatggtagtttagcc
caatccacagcacagacccaggctcctcagacacagtatgtgactgcagaaatccagggc
tcccccacgcagtctggaaatgctcaaagcactcctcagtacattgttgttacagtcaca
gaaggctcccttcactcaagtgacagtgtgtcggactctagccctcctccagctgtggtg
caaacaggagttcccacacaggttgttcagcaggttcagacggctcaacagaggtctgtt
gtgcaggccacctctcagatagccaagactgagccaggcactcagctcagtgtcaccagt
ctacagcctgttcatatcagccaggagttcctccctagcaccaaggtaacagcgttagtc
agggataacaatatagaagaatggcagctacaacatgagataagacagccagagtgccag
gcctgggcatcagcagactacgaaaaggaatgctgctgcacacctccctacctcccattg
gacctctttcagtattaccaatcactgtacctgctctctgtgcaagagaaagagatagga
gcccaccctgcagtcacaagctcaggccccgataagccaccactgcaggctacaactacc
actttccaagtccagcagcagctcacaccagtgccagtgcaacatgtgtacgccaatcaa
gtgcagtatgtggaaggaggagagaccaactacaccaccagcacaatccgttccagcgcc
tttccttacactgacacacccttgtacacccagaccacagctgcccagtattatgaaggt
cagccaacatcaggctcatccacccctggcacacctctaaccgtctctgtgactgccggc
acaacagggggtgtgtccatgtttgtagcccagcccaccagtgcagcagggggaggggcc
acagtggtgaccacaggtggcaccaccaatggggcaggtgaaggggcaggcaccaatggt
ggcgcaacaggcagctatgtgatccaggggggttacatgctaggcagcagcggaggggca
gctggcaacagtcagaactactcacacacagcccgcgcctccccagccactgtgagtatt
acagagggcgaggagagtagcgtgccgtcggcagacaagaaggtacagtggttgctggac
aactatgagacagctgaaggagtgagtctgccacgttctaccctctactgccactatttg
ctgcactgccaggagcagaaactagagcctgttaatgctgcctctttcgggaaactcatt
aggtctgtgttcatggggctacgcacacgacgcctgggcacacggggtaattctaaatac
cactactacgggctgaggatcaaggcaggctcctctcttctccgtctgatggaagaccag
caacatctggccatgaggcaacagcccttctcacagaaacagaggttgaagcctgtgcat
aaagtagagggaatgaccaatggcacagcagcagcagcaggagcaggccagcagcagggc
tcagggcaggtggacatcagcacccaggttcagcagtaccagcagttcctagatgcatca
cgcgctctcccagagtttccagacattgacctccaagggaagtctctgccagagggaatt
gaggtggagcacataaagagctttcagctgctgtacagagaacactgtgaggccatacta
gatgtgatggtcaacctgcagtttaccctggtggaaactctgtggaagaccttctggagg
ttcagtcagagtcaggctggagatgccacgttggctgttcatgatgagtcagaaaagcgc
ctcccaaagtcctgcctggtgttgctgtgcaagtatgatccggtgctgcgctggagccgg
gactgtgacaacagcctgtaccagggtctggtggagatcctcatcccagatgtcctcagg
cccatccccagtgccttaactcaagccatccgcaactttgccaagagcctggagagctgg
ctgaccaatgccatgatgaacatcccagaggaaatggtccgcatcaaggtaacatcagcc
aatgcatttgcccagacactgcgtcgctacaccagtctgaaccacctcgcccaggcagcc
cgcgctgtcctccagaacacggcccagatcaaccagatgctctccgacctcaaccgagtc
gactttgctaacgtccaggagcaggcttcatgggtgtgccggtgtgaagaccgtgttgtt
cagcggctggagcaggatttcaagctgaccctccaacagcagaactccctcgagcagtgg
gctgcgtggctggatggtgtagtctcccaggtcctaaagccctaccagcagagccctgcc
ttcccgaaggccgccaaactcttcctactcaagtggtccttttacagttccatggtgatc
agggacctgactctgaggagtgcagccagttttggttcctttcacctgatccgcctgctg
tacgatgagtacatgtactacctgatagagcacagagtggcccaggctaaaggagagacc
cccattgctgtcatgggagagtttgccagtttaggccggggtctaaaccagctggatcct
gacaaagaagaggaagaggaagaggaggaggagagtgatgaggaaggtcaggagctgtcc
ctcccctcagacggggccgtgctaggagacgagtctctggagccgcctgccaagctggcc
agaatggaccagagagtcctcttcacaaccggatcagctgacaactaa
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