Sander lucioperca (pikeperch): 116059826
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Entry
116059826 CDS
T07345
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116059826 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116059826 (patl1)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116059826 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
116059826 (patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
116059826
NCBI-ProteinID:
XP_031168949
Ensembl:
ENSSLUG00000020605
UniProt:
A0A8D0D8K2
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Position
4:complement(37068884..37121159)
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AA seq
826 aa
AA seq
DB search
MFRFQSLDEDCTLEEEDDGLIQEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAQLDERDGL
GLGLGGEMGGESNLGGAEDSSSTHLPSSTGHLPQPSSIPSLKFSSSSSGPPPPDVEDRGG
EGDLAESLARLILEADPAIAGVGAAERPGPSPSSSGSSLSALQGLDLPRVLPSILHPTQP
HQHPHHLQHQLPPGPSTSGLPPGPSPSSLLSYQQQQHLLRRGTAPMAQMNSHSIWENSMG
FGPVSVTPGLVTHMEDSPLMSIIKEVGLPKRPPQSRNDEGRDLSERVPPPRSSSPVIGSP
PVRAVPIGTPPKQPMSHALNHQIHHPTAVHVRAPVQHRYPPPFPERVSPNTLLNIANSPL
CRGPFPPGVGPVLSQIQRAQLLNSQVAGFPHGGPAPPLLPGGGFRPFFGGPPPPLGHRMG
LPPPHGPPNHTPPIRHNTTHLHPQHRRMLTQRMQNRGGDRGRTGLDRRSRDPYSNLMTQK
EKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEHTTKLITPQVAKVE
HTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYTVEKMY
SLLLEVQDFEKRFVQVPEEDREALLEQHKTNTLQLCNSLREWDDRVSDEQCVMIMSVRKG
KRLISRLLSFLPSPQAAAIVMAISRNLPALAKKDKQDQVLCWLVEPISAVIQSLSSSALT
DLLQELQGSEGQLATVLHNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTR
ELLSVPASSLSSPLFTPPNLLSLFSRYVDRQRLELLQDKLQISSLS
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgttccgatttcagtccctggatgaagactgtacgctggaggaggaagacgatggactg
atacaggaggaagatgaaattgatcagttcaacgatgacaccttcggagctggggccatc
gatgacgactggcaggaggaacacaaacgcctcgctcagctcgatgagagggacgggctg
ggactggggttaggaggggagatgggaggagaatcaaatttaggaggagctgaggactca
tcctccacccatcttccttcctctacgggccatctcccccaaccatcttccatcccttca
ctcaaattctcctcgtcttcctctggaccccctccaccagatgtggaggatcgaggaggg
gaaggcgacttggctgagtccctggccagactcatcctggaggctgacccggccattgct
ggggtcggggcagctgagagacctggtccatcccccagctcttcaggatccagcctgtct
gctctgcagggcctagacctacccagagtcctgccctccatcctgcatcccactcaacca
caccagcatccccatcacctgcagcaccagctgcctcctgggccctctacctcaggcctt
cctcctggcccttctccctcgtctttgctcagctaccaacagcagcagcacttgctacgc
agagggactgctcctatggcccagatgaactctcacagtatctgggagaacagtatgggg
tttgggccggtcagtgtcacccccggactggttacacacatggaggatagtccactaatg
tctataatcaaggaggtgggccttcctaaacgacctcctcaaagtagaaatgatgaagga
cgggatttgtcagaaagggtcccacctccacgctcttcttcccctgtgattggctcccct
ccggtgagggcagtgcctattgggaccccgcccaaacagcctatgagccatgccctgaat
catcagatccaccaccccacggcggttcatgtgagagccccagtccaacacagataccct
cctccttttcctgagcgtgtgtcacccaacaccctactcaatatagctaactctccgctg
tgtcgcggtccgttccctcctggagttggtcctgtcctgtcacagattcaacgggctcag
ctgctcaactctcaggtggctggttttcctcatggtggtccagcgcctcctttgttacca
ggtggtggttttaggccgttcttcgggggccctcctcctccacttggtcatagaatgggt
ctgccaccccctcatggcccccctaatcacacgccacctatccggcacaacaccacacac
cttcacccccagcaccgccgcatgctcacccaacgcatgcagaaccggggaggggaccgt
ggcaggactggattggaccggcgcagcagggacccctacagtaaccttatgactcaaaaa
gagaaggaatgggtaaccaagatccagatgatgcagctgcaaagtactgacccttacctg
gatgactactactatcagaactactatgaaaagatggagaaacgtcaggaaagagagaga
gacagcagcaagaaggaacacaccaccaaactgatcactccacaggtggccaaggttgaa
cacacctacagaccagttcagtttgcaggctctctcggtaagctgacggtctccagcgtc
aacaaccctcgcaagatgattgatgctgtggtgacaacccgcacagatgacgaggaaaaa
agagagaagcaggtttggaataagaggcgacagatcctctacactgtggagaaaatgtac
agtttgctgctggaagttcaagactttgagaaacgttttgtccaggtgccagaggaggac
agggaggctcttctagagcagcataaaaccaacaccttgcagctgtgcaactctctgcgg
gagtgggatgaccgagtgagtgatgagcagtgtgtgatgatcatgtcagtgaggaagggc
aagcggctcatctccaggctcctctctttcctgccctcaccccaagctgccgccattgtc
atggcgatttctcgcaaccttcctgccctggccaagaaggacaagcaggaccaggtgctg
tgctggttagtggagccaatttctgctgtgatccagtcattgtcaagctctgcccttaca
gacttactccaggagcttcagggcagtgagggccaactggccacagtattgcacaacaag
tttggtgtgacactgctgtatctgatcctgagtgaaggagagaggatgcaaagttccgac
cccaactgtcaactcatggacgacaatcgatggacggagttggtgttttcagtgacgagg
gagttgctcagcgtgccggcctcatcactctcttctcccctcttcacccctcccaacctg
ctctccctcttctcacgctacgttgatcggcagaggctggagctgttacaggacaagcta
cagatctcttctttgtcctga
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