KEGG   Sander lucioperca (pikeperch): 116059826
Entry
116059826         CDS       T07345                                 
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
sluc  Sander lucioperca (pikeperch)
Pathway
sluc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sluc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116059826 (patl1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sluc03019]
    116059826 (patl1)
Messenger RNA biogenesis [BR:sluc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     116059826 (patl1)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     116059826 (patl1)
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 116059826
NCBI-ProteinID: XP_031168949
Ensembl: ENSSLUG00000020605
UniProt: A0A8D0D8K2
LinkDB
Position
4:complement(37068884..37121159)
AA seq 826 aa
MFRFQSLDEDCTLEEEDDGLIQEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAQLDERDGL
GLGLGGEMGGESNLGGAEDSSSTHLPSSTGHLPQPSSIPSLKFSSSSSGPPPPDVEDRGG
EGDLAESLARLILEADPAIAGVGAAERPGPSPSSSGSSLSALQGLDLPRVLPSILHPTQP
HQHPHHLQHQLPPGPSTSGLPPGPSPSSLLSYQQQQHLLRRGTAPMAQMNSHSIWENSMG
FGPVSVTPGLVTHMEDSPLMSIIKEVGLPKRPPQSRNDEGRDLSERVPPPRSSSPVIGSP
PVRAVPIGTPPKQPMSHALNHQIHHPTAVHVRAPVQHRYPPPFPERVSPNTLLNIANSPL
CRGPFPPGVGPVLSQIQRAQLLNSQVAGFPHGGPAPPLLPGGGFRPFFGGPPPPLGHRMG
LPPPHGPPNHTPPIRHNTTHLHPQHRRMLTQRMQNRGGDRGRTGLDRRSRDPYSNLMTQK
EKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEHTTKLITPQVAKVE
HTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYTVEKMY
SLLLEVQDFEKRFVQVPEEDREALLEQHKTNTLQLCNSLREWDDRVSDEQCVMIMSVRKG
KRLISRLLSFLPSPQAAAIVMAISRNLPALAKKDKQDQVLCWLVEPISAVIQSLSSSALT
DLLQELQGSEGQLATVLHNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTR
ELLSVPASSLSSPLFTPPNLLSLFSRYVDRQRLELLQDKLQISSLS
NT seq 2481 nt   +upstreamnt  +downstreamnt
atgttccgatttcagtccctggatgaagactgtacgctggaggaggaagacgatggactg
atacaggaggaagatgaaattgatcagttcaacgatgacaccttcggagctggggccatc
gatgacgactggcaggaggaacacaaacgcctcgctcagctcgatgagagggacgggctg
ggactggggttaggaggggagatgggaggagaatcaaatttaggaggagctgaggactca
tcctccacccatcttccttcctctacgggccatctcccccaaccatcttccatcccttca
ctcaaattctcctcgtcttcctctggaccccctccaccagatgtggaggatcgaggaggg
gaaggcgacttggctgagtccctggccagactcatcctggaggctgacccggccattgct
ggggtcggggcagctgagagacctggtccatcccccagctcttcaggatccagcctgtct
gctctgcagggcctagacctacccagagtcctgccctccatcctgcatcccactcaacca
caccagcatccccatcacctgcagcaccagctgcctcctgggccctctacctcaggcctt
cctcctggcccttctccctcgtctttgctcagctaccaacagcagcagcacttgctacgc
agagggactgctcctatggcccagatgaactctcacagtatctgggagaacagtatgggg
tttgggccggtcagtgtcacccccggactggttacacacatggaggatagtccactaatg
tctataatcaaggaggtgggccttcctaaacgacctcctcaaagtagaaatgatgaagga
cgggatttgtcagaaagggtcccacctccacgctcttcttcccctgtgattggctcccct
ccggtgagggcagtgcctattgggaccccgcccaaacagcctatgagccatgccctgaat
catcagatccaccaccccacggcggttcatgtgagagccccagtccaacacagataccct
cctccttttcctgagcgtgtgtcacccaacaccctactcaatatagctaactctccgctg
tgtcgcggtccgttccctcctggagttggtcctgtcctgtcacagattcaacgggctcag
ctgctcaactctcaggtggctggttttcctcatggtggtccagcgcctcctttgttacca
ggtggtggttttaggccgttcttcgggggccctcctcctccacttggtcatagaatgggt
ctgccaccccctcatggcccccctaatcacacgccacctatccggcacaacaccacacac
cttcacccccagcaccgccgcatgctcacccaacgcatgcagaaccggggaggggaccgt
ggcaggactggattggaccggcgcagcagggacccctacagtaaccttatgactcaaaaa
gagaaggaatgggtaaccaagatccagatgatgcagctgcaaagtactgacccttacctg
gatgactactactatcagaactactatgaaaagatggagaaacgtcaggaaagagagaga
gacagcagcaagaaggaacacaccaccaaactgatcactccacaggtggccaaggttgaa
cacacctacagaccagttcagtttgcaggctctctcggtaagctgacggtctccagcgtc
aacaaccctcgcaagatgattgatgctgtggtgacaacccgcacagatgacgaggaaaaa
agagagaagcaggtttggaataagaggcgacagatcctctacactgtggagaaaatgtac
agtttgctgctggaagttcaagactttgagaaacgttttgtccaggtgccagaggaggac
agggaggctcttctagagcagcataaaaccaacaccttgcagctgtgcaactctctgcgg
gagtgggatgaccgagtgagtgatgagcagtgtgtgatgatcatgtcagtgaggaagggc
aagcggctcatctccaggctcctctctttcctgccctcaccccaagctgccgccattgtc
atggcgatttctcgcaaccttcctgccctggccaagaaggacaagcaggaccaggtgctg
tgctggttagtggagccaatttctgctgtgatccagtcattgtcaagctctgcccttaca
gacttactccaggagcttcagggcagtgagggccaactggccacagtattgcacaacaag
tttggtgtgacactgctgtatctgatcctgagtgaaggagagaggatgcaaagttccgac
cccaactgtcaactcatggacgacaatcgatggacggagttggtgttttcagtgacgagg
gagttgctcagcgtgccggcctcatcactctcttctcccctcttcacccctcccaacctg
ctctccctcttctcacgctacgttgatcggcagaggctggagctgttacaggacaagcta
cagatctcttctttgtcctga

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