Sander lucioperca (pikeperch): 116060014
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Entry
116060014 CDS
T07345
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116060014 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116060014 (dhx16)
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116060014 (dhx16)
Spliceosome [BR:
sluc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116060014 (dhx16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
Flavi_DEAD
Cas3-like_C_2
nSTAND3
PWI
Motif
Other DBs
NCBI-GeneID:
116060014
NCBI-ProteinID:
XP_031169210
Ensembl:
ENSSLUG00000006884
UniProt:
A0A8C9Y3V5
LinkDB
All DBs
Position
10:complement(14716007..14733265)
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AA seq
1053 aa
AA seq
DB search
MANLEQWVNDRLHDILGLSDRYVSQFMIGTARKASSPQDFVTRLEQTGTIDIEPSVVAFA
QELFDKIPRKQVVEKPARAMEREAIEMDRKNRTYTLLEDSDSDGDAVIEKQKGKKKSKDK
DRGNRRKHIRQKKESESSSEDEASKRGSSGQGEHKSLNKEDEEEEWEKEERERQHDIEER
DAFAERVKQKDKDKTRNITERTDKKAYEEAQKRLKMAEDDQKNMLPELRKRSRWDYLKKR
EAEKLEDLEAEIKDDEYLFHTDELTERERKELEYKRTLRDLAKDYKKAGAKEQEERKNRY
YMPEEKRSKEMPQRDLELEETPMELGGEQGRWEEERLKTASLSFGAKREREQGMRQEQEK
YQLILEEEEMIEFVSTAMTMKGTRTEEEQEALALSQAELKKQSMQEVRRSLPIFPYREDL
LAAIHEHQILVIEGETGSGKTTQIPQYLLEDGYTQGGMKIGCTQPRRVAAMSVAARVAQE
MSVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLH
TDILFGLIKDIARFRSDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPE
ADYLEACVVSVLQIHVTQSPGDILVFLTGQEEIEACCELLQERCRRLGSKIAELLVLPIY
ANLPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMES
LIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEESTVPEIQRTNLGNVVLLLK
SLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMI
LASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYTQW
LESGYSTQWCYENFIQFRSMRRARDVRDQLEGLMDRIEVEVVSSQGDSLPIRKAVTAGYF
YHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSGWL
LEVAPHYYKSKELEDSSSKKMPRKQGKTKEELG
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggctaatctagagcagtgggtgaatgaccgtctccatgacatcctcgggttgagtgac
agatatgtgtctcaattcatgatcggcactgcacggaaagcgtcgagtcctcaagatttt
gtgactcgtctcgagcagacgggcacgattgacatcgaaccgagtgtggttgcctttgcg
caggagctctttgacaagattcctcgcaagcaggttgtcgagaaaccagcccgtgcgatg
gaacgggaagccattgaaatggacaggaagaatcgcacgtacacattactggaggacagc
gacagtgatggagacgctgtgatagagaaacagaaagggaaaaagaaaagcaaggacaaa
gacagaggaaacaggaggaaacacatcagacagaagaaagagagtgagtcgtcaagtgag
gacgaagcatctaaaaggggcagttccggccaaggggagcacaagtctctcaataaggaa
gatgaagaggaagagtgggagaaggaagagcgagagcgacagcatgacattgaagagaga
gatgcgtttgccgagcgagtcaagcagaaagacaaagacaagacccgcaacataacagag
aggactgacaaaaaggcttatgaggaagctcagaagaggctgaagatggctgaagatgat
cagaagaatatgttgccagagttgaggaagcgctctcgctgggattatctaaagaagaga
gaggcagagaagctggaggacctggaggcagagatcaaagacgatgagtaccttttccat
acagatgagctgactgagagggagagaaaggagttggaatacaaacgcacccttcgtgac
ctggctaaagattacaaaaaggctggtgccaaggaacaggaggagaggaagaaccgatac
tatatgccggaagagaagagaagcaaggagatgccgcagagagacctggagctggaggaa
actcccatggagctgggaggagagcaaggccgctgggaggaggagaggctgaagacggcc
tccctcagcttcggcgccaagagggagcgagagcaagggatgaggcaggagcaggagaag
taccagctgatcctagaggaggaagagatgatcgagtttgtcagcactgccatgaccatg
aagggaactcggacggaagaggagcaggaggccctggctctgtcccaggcggagctgaag
aaacagtccatgcaggaggtccgacgcagtctgcccatcttcccctacagggaggacctg
ctagctgccatccacgagcaccagatcctggtcattgagggggagacgggctcgggaaag
accacccagatcccgcagtacctcctggaagacggctacacacaaggaggcatgaagatc
ggatgtacacagcctcgcagagtggcagccatgtcagtggcagccagagtggcccaggaa
atgagcgtcaagcttgggaatgaggtgggttatagtattcgttttgaggactgcacctca
gagagaacagtgctcaagtacatgacagatggcatgctgctccgagagtttctcaccgag
cccgacctggccagctacagtgtgatcatcatagatgaagcccacgagcgaacactccac
acagacatcctctttggtctgattaaagacatcgccagattcagatcagacctgaaggtg
ctggtggccagcgccactctggacaccgagcgcttctcctgcttctttgacgacgcacca
gtcttcaggatccctggcaggaggttccccgtcgatatcttctacactaaagctccagag
gccgactacctggaagcctgcgtggtgtcggtgctacagatccacgtcacccagtctcct
ggagacattctggtcttcctcactggacaggaggagatcgaagcgtgttgcgagctgctc
caggagagatgccggcggcttggatctaagatagcagagctgctggttcttcccatctat
gccaacctgccatcagacatgcaggcaaagatcttcaaccctactccacctggagcccgt
aaggtggtggtcgctaccaatatagcagaaacctcactgaccatagatggcatcatctac
gtcattgacccaggcttctgcaaacaaaagagttacaacgctcgcaccggcatggagtca
ctcattgtcacaccctgttcacgggcttcggccaaccagagagcaggccgtgcaggcaga
gtggctgctgggaaatgtttcaggctttacacagcctgggcctttaaacatgagatggaa
gaatcgactgtgcccgagattcagaggaccaacttgggaaatgtagtcctgctgctgaag
agtctaggcatcaatgacctaattcactttgacttcatggacccacctcctcatgagact
ctggtcttagcgctggagcagctctacgctctgggagcactcaaccacctgggagagctc
accaagctgggtcgcaggatggctgagctacccgtggaccccatgttgagcaagatgatc
ctggcctccgagcagtacaagtgttcagaggaagtgttgacaattgcggccatgctgtcg
gtgaacaactctattttctaccgacccaaagacaaggtggtgcacgccgacaacgccagg
atgaactttgtggtgccagggggagaccacctggtgctgctcaacgtgtacacacagtgg
ttggagagtggttactccacacagtggtgctacgagaacttcatccagttccgctccatg
agaagagcccgggacgtcagggaccagctggagggtctgatggatcgtattgaggtggag
gtggtcagctcccagggagacagcttacccattcgcaaggcggtgacggcaggatatttc
tatcacacggcgagactgagcaaaggtggctacaagacagtgaagcaccagcagacggtc
tatgtccaccccaacagctctctgttcgaggagcagccccgctggctcatctaccatgag
ttggttttcaccaccaaggagttcatgagacaggttattgagatagacagcggctggctg
cttgaagtggctcctcactactacaagagcaaagagctggaggacagcagcagcaagaag
atgccccgcaagcaaggaaaaacaaaagaggagctgggctga
DBGET
integrated database retrieval system
