Sander lucioperca (pikeperch): 116060261
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Entry
116060261 CDS
T07345
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc02010
ABC transporters
sluc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
116060261
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116060261
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sluc02000
]
116060261
Transporters [BR:
sluc02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
116060261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
116060261
NCBI-ProteinID:
XP_035862191
Ensembl:
ENSSLUG00000017482
LinkDB
All DBs
Position
1:6203436..6293630
Genome browser
AA seq
2292 aa
AA seq
DB search
MSVSTQLGLLLWKNFTYRRRQTLQLLVEIIWPLLIFFILITVRLNYPPYEQHECHFPNKA
MPSAGTLPWLQGILCNANNPCFRSPTPGESPGVVGNFNGSIISRMFSDAKKILLYSQNDK
NLDGFKELAQALKVLQESQSGFKLKHFLRDGETLTAFLLRNASLSQHDVQKITDADVDLE
KVLLKGFGVHLRDMCPRKGGQQTVDDFVRISDPQVSVQIQEVICQAPASWLDHAEENFLN
NLDFLKPIKRDVTSDPEAVKLVARATNNLLDSLGSLAVELAGMNSWVDLRKEIIFLTQNA
TSSPSTMYQAVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGNHGNSSEDETAALYDNSS
TPYCNSLVQSMDSNPMSRMIWQALKPLLLGKILYTPHTPATQRVIHEVNRTFQELGVFRD
LGGMWEEMRPKVWKFMENSEQMDLLRTLLKNNVTASFFGAQLSGTDWTVDDVSYFLSKQA
PDPRRPGVTWREVFNETDQAIMSISRFMECVNLDKLEPVSSEERLVNRSMVLLEDRKFWA
GIVFPDVEPNATELPTKLNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGFT
YLQDVIEQGIIRAMTGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAI
ILKSVVYEKEARLKETMRIMGLNNGILWFSWFISSLIPLLVSAGLLVLLLKKGNLLPYSD
PGVVFLFLGSFAVVTIMQCFLLSTAFARANLAAACGGIIYFTLYLPYVMCVAWEDYIGFG
AKVFASFLSPVAFGFGCEYFALFEEQGVGIQWKNLVSSPLEEDDYSLRTSIIMMYVDSFL
YGVLTWYIEAVFPGQYGIPRPWYFPLSKSYWFGEKEGKSNSVPLSRRGNPEAVCIEEEPA
HLQPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT
SGTAYILGRDIRTELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIE
QILQDTGLPHKRSARANALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL
LLKYRPGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKE
PEPSLSSCRNSCSTVSFSKKEEECASVSSSDAGLGSEHESEAAAIESVPAACAPCPPDLS
LVSGLILGHVPAARLVEDLGHELTYVLPYSAAKDGAFVSLFRELDLKLPDLNISSYGVSD
TTLEEIFLKVAEDNGVDTDVPSDGTLPVPRRRRRNHAFGGGDHQSCLRPLTEDDNNDCNE
SDGDPESRETDWLSSSDGKGSYQVKGWSLKKQQFVALMWKRFLNARRSRKGFFAQIVLPA
VFVCIALVFSVIVPPFGKYPSLELQPWMYEDQVTFISDDAPGDVNMQKLLGALLDAPGFG
TRCMEGHPIPEAPCTMGDDGWRTPEVPESITQLFSSSNWTMDDPSPACVCSCDGNKKMLP
DCPAGAGGLPPPEMKLSATDSLQNLTGRNISDYLVKTYADIIGKSLKNKVWVNEFRYGGF
SLGARSTQVLPPANEVDDAIERIRKIFELQKGAAADRFLDNLSGFINGLDTKNNVKIWFN
NKGWHSIGAFINVMNNGILRANLPPGRDASRYGISAFNHPLNLTKEQLSQVALVTTSVDV
LVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWVANFIWDMCNYVVPAT
LVIIIFISFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNI
LIGINGSISTFVMELFGNNEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERF
GENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYRFCIKPRPVSTLTKLGPLGEEDE
DVARERQRIVHGLGHGDILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKT
TTFKMLTGDTMVTSGEAFLAGKSILREIDVVHQNMGYCPQFDSINELLTGREHLELYAVL
RGVPEKEVCDVAEWGIRKLGLLKYSDKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTT
GMDPKARRALWNCIHSIIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN
RFGDGYTIILRVGGPDADLLPVMKFIESELSGSTLKEKHRNMLQYQLPSSLTSLTHIFNI
LAQNKDTLRIEDYSVTQTTLDQVFVNFAKDQSDDYHSKDNSVRRRDVAIEVGVLSGNHGD
AGGAAALGESVM
NT seq
6879 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtctccacccagctgggtctgctgctgtggaagaacttcacctacagacgccga
cagacgcttcagctcctggtagagatcatctggccgctcctcatcttcttcatcctcatc
accgtgcgcctcaactaccctccgtacgaacagcacgaatgtcattttcccaacaaggcg
atgccgtcggccggcacgttgccatggctacagggaatcctctgcaacgccaacaacccg
tgcttcaggagcccgacgccgggcgagtctccgggcgtcgtcgggaacttcaacggctcc
ataatttctcggatgttttcagacgccaagaagattcttctctacagtcagaatgataaa
aacctcgacggattcaaggaactcgctcaggctctcaaggtcctgcaggagagccaatca
gggttcaagttgaagcacttcctgcgggacggcgagactctgacggcgttcctgctgaga
aacgcttcgctgtcccaacacgatgtccagaagatcacagacgccgacgtggacctggag
aaggtgctcctgaaggggttcggggtccacctgagggacatgtgtcccaggaagggcggc
cagcagaccgtggacgacttcgtgaggatctcggaccctcaggtgtccgtgcagatacag
gaagtgatctgtcaggcgccggccagctggctggaccacgctgaggagaacttcctcaac
aacctggacttcctgaagcccatcaagagggacgtgacgtccgaccccgaggccgtcaag
ctggttgccagggcgaccaacaacctcctggacagcctgggttcgctggcggtcgagctg
gccggtatgaacagctgggtggacctgaggaaggagatcatcttcctgacccagaacgcc
acgtcctcccccagcaccatgtaccaggccgtctccaggatcgtgtgcggccacccagag
ggggggggcctgcagatcaagtccctcaactggtacgaggacagcaactacaaggcgctg
ttcggtaaccacggcaacagcagcgaggacgagaccgccgcgctctacgacaactcctcc
actccctactgtaacagtctggtccagagcatggactctaacccgatgtccaggatgatc
tggcaggctctgaagcctctgctgctggggaagatcctgtacacgccccacacccccgcc
acccagagggtcatccacgaggtgaaccggaccttccaggagctcggtgtgttcagggac
ctgggcgggatgtgggaggagatgagacccaaagtctggaagttcatggagaacagcgag
cagatggacctgctccggactctgctgaagaacaacgtcaccgccagcttctttggagct
cagctgagcggcacggactggacggtggacgacgtctcctacttcctgtccaagcaggcg
ccggacccccgccggccgggcgtcacctggagggaggtgttcaacgagacggaccaggcc
atcatgagcatctcccgcttcatggagtgtgtaaacctggataaactggagcctgtctcc
agcgaggagcggctggtgaaccggtccatggttctgctggaggacaggaagttctgggcg
gggatcgtgttccctgacgttgagcccaacgccaccgagctgccgaccaaactcaactac
aagatccgcatggacatcgacaacgtggagaggaccaataagatcaaagacgcgtactgg
gaccccggtccccgggccgacccctttgaggacatgcggtacatctggggcgggttcacg
tacctgcaggacgttatcgagcaaggcatcatcagagccatgacgggcaccaaggagaag
acgggcgtctacatccagcagatgccgtatccctgctacgtagacgacatcttcctgcga
gtgatgagccgctccatgcctctcttcatgacgctggcctggatgtactcggtggcgatc
atcctgaagagcgtggtgtacgagaaggaagctcggctgaaggagaccatgaggattatg
ggattgaacaacggcatcctgtggttcagctggttcatcagcagcctgattcctctgctg
gtcagcgctgggctgctggtgctgctgctcaagaaggggaacctgctgccctacagcgac
cccggcgtggtcttcctcttcctgggatccttcgctgtggtaaccatcatgcagtgcttc
ctcctcagcacggcgttcgcccgcgccaacctagcggccgcctgcggagggatcatctac
ttcacgctctacctgccctacgtgatgtgtgtcgcctgggaggactacatcggcttcgga
gccaaagtcttcgccagcttcctgtcccccgtggcgttcgggttcggctgcgagtacttt
gccctgttcgaggagcagggggtcggcatccagtggaagaacctggtgtccagtcccctg
gaggaggacgactacagcctccgcacctccatcatcatgatgtacgtcgactccttcctc
tacggagtcctcacctggtacatcgaggccgtgttcccaggtcagtacgggatccctcgg
ccctggtacttccccctcagtaagtcctactggttcggagagaaggaaggaaagtccaac
agcgttcctctgagccggagaggaaacccagaagcggtgtgcatcgaggaggagccggct
cacctgcagcccggcgtctacatcgagaacctggtgaaggtttaccgtcacgggaagaag
ctggcggtggacggactcacgctcggcttctacgagggacagatcacgtccttcctggga
cacaacggagccgggaaaaccaccaccatgtccatcctgacgggtctgttccctcccacc
tctggtaccgcctacatcctgggcagagacatccggacggagctgagcgccatcagacag
agtctgggagtctgtcctcaacacaacgtcctcttcagcatgctgacggtggaggaacac
atctggttctacggccggctcaaaggtttgtcggagcagcaggtgaaaggcgagatcgag
cagatcctgcaggacacggggctgccgcacaaacgcagcgcccgggccaacgcgctgtct
ggaggcatgcagaggaaactctcggtggcgctggccttcgtcggggggtccaaggtcgtg
atcctggatgaacccacggccggagtcgacccgtacgctcgcagaggaatctgggacctg
ctgctgaagtaccggcctgggcggaccatcatcctgtcaacgcaccacatggacgaggcg
gacattttgggcgaccgcatcgctattatctcccacgggaagctgtgctgcgtgggctcg
tctctgttcctgaagaaccagctggggacgggctactacctgacgctggtgaagaaggaa
ccggaaccatcgctcagctcctgcaggaactcctgcagcaccgtgtccttcagcaagaag
gaggaggagtgtgcgtctgtcagcagcagcgacgccggactcggcagcgagcatgaaagt
gaagcagctgccatcgaaagcgtcccagcggcgtgcgccccctgcccccccgacttgtcg
ctggtctcgggtctgatcctgggccacgtccccgccgcccgcctggtggaggacctggga
cacgagctgacctacgtgctgccctactcggccgccaaggacggggccttcgtgtctctg
ttcagagagctggacctgaagctgccagacctcaacatctccagctacggtgtctcagac
accacgctggaggagattttcctgaaagtggccgaagataacggagtcgacactgacgtt
ccctcagacgggaccctccctgtcccgaggcggcggaggaggaatcatgcgttcggaggc
ggagaccatcagagttgtctgagaccgttaacggaggacgacaacaacgactgtaatgag
tctgacggagatcctgagagccgagagacggactggctcagctcttcagacgggaagggc
tcgtatcaggtgaagggctggagtctgaagaagcagcagtttgtggctctgatgtggaaa
cgatttctcaacgctcgacgctcccgcaagggcttcttcgctcagattgttctcccggcg
gtgtttgtgtgcatcgcgctggtcttcagtgtcatcgtccctccgtttgggaagtatccg
agtctggagctgcagccctggatgtacgaggaccaggtcaccttcatcagtgatgacgcc
cccggagacgtcaacatgcagaagttacttggtgctctgttggacgcgccaggcttcggg
actcgctgcatggagggacatcccatcccagaggctccgtgtacgatgggcgatgacggc
tggagaactcctgaggtccctgaaagcatcacgcagctgttcagctcgtccaactggacg
atggacgacccgtctccggcgtgcgtctgcagctgtgacggcaacaagaagatgctgcca
gactgtcccgctggagctggggggctcccaccaccagagatgaagctgagcgccaccgac
tctcttcagaacctgacggggagaaacatctccgactacctggtgaaaacatacgccgac
atcatcggcaagagtttgaagaacaaagtttgggtgaatgaattcaggtacggagggttc
tcattgggcgccaggagcactcaggtcctcccaccggccaatgaggtcgacgacgccatc
gagcgaatcagaaagatcttcgagttacagaagggcgcagctgcagatcgattcctcgac
aatttgtccggtttcattaacggtttggacacgaagaacaatgtcaagatctggttcaac
aacaaaggctggcacagcatcggcgccttcatcaacgtgatgaacaacggcatcctgcgc
gccaacctgccgccgggccgggacgccagtcgctacggcatcagcgccttcaaccatcct
ctgaacctcaccaaggagcagctgtcacaggtcgctctggtaacgacctccgtggatgtc
ctggtgtccatctgtgttatcttcgccatgtccttcgtccccgccagcttcgtggtcttc
ctcatccaggagcgagtcagcaaagccaaacacatgcagttcatcagcggcgtgcagccg
ctgctctactgggtggccaacttcatctgggacatgtgtaactacgtcgtcccggcaacg
ctggtcatcatcatcttcatcagtttccagcagaaagcctacgtctcctccaccaacctg
ccggtgctcgcactgctgctgctgctctacggctggtccatcactcctctgatgtaccca
gcatcgttcttctttaagatcccgagcacggcgtacgtcgtcctcaccagcgtcaacatc
ctgatcggcatcaacgggagcatctctaccttcgtcatggagctgtttgggaacaatgag
atcggaggaatcaacgacatcctgaagaacgtcctgctcatcttccctcacttctgtctc
ggccgaggactcatcgacatggtgaagaaccaggccatggccgacgccctggagagattt
ggtgagaacaggttccgctctcctctggagtgggacatggtggggaagaacctgttcgcc
atggctgtggagggagtcgtgttcttcatcatcaccgtcctcatccagtacagattctgc
atcaaacccaggccggtcagtacactcaccaaactgggccctctgggagaagaggatgag
gacgtggcccgagagagacagaggattgtccacggcctcggacacggagacatcctggag
ctgagacagctcaccaaggtgtttaagaggaaacagaagccagcggtggaccgactgtgt
gtggggattcctcctggagagtgtttcgggctgcttggtgtgaacggagccgggaagacg
actacctttaagatgttgaccggagacaccatggtgaccagtggggaggccttcctggcc
gggaagagcatcctgagggagattgatgtggtccatcagaacatgggttactgtcctcag
tttgactcgatcaacgagctgctgacaggacgagaacatctggagctgtacgccgtcctg
agaggcgtccccgagaaggaagtctgcgacgtggctgagtgggggatcaggaagctgggt
ctgttgaagtattctgataaggcagcaggaagttacagcggaggaaacatgaggaaactg
tccaccgccatggcgctgatcggagctccaccggtcgtcttcctggacgagccgaccacg
ggcatggaccctaaagctcgccgtgctctctggaactgcatccacagcatcatcaaggag
ggacgctccgtcgtcctcacctcacacagtatggaggagtgtgaggctctgtgtaccagg
atggccatcatggtgaacggcaggttcagatgtctcggcagcgtccaacacctcaagaac
aggttcggggacgggtacaccatcatcctgcgggtgggggggccggacgccgacctgctg
cccgtcatgaagttcatcgagagcgagctgagcggcagcacgctgaaggagaagcaccgc
aacatgctgcagtaccagctgccctcctctctcacctcgctcacacacatcttcaacatc
ctcgcccaaaacaaagacacgctgaggatcgaagactactccgtcacccagacaacgctg
gaccaggtgtttgtgaactttgcgaaggaccagagtgatgactatcactccaaagacaac
tcggtgagacggcgagacgtggccatcgaggtcggcgtgctgagtggtaaccacggagac
gctggcggtgccgcggcgctgggggagagcgtcatgtga
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integrated database retrieval system
