Sander lucioperca (pikeperch): 116060551
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Entry
116060551 CDS
T07345
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sluc03009
]
116060551 (ddx21)
03036 Chromosome and associated proteins [BR:
sluc03036
]
116060551 (ddx21)
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116060551 (ddx21)
Ribosome biogenesis [BR:
sluc03009
]
Eukaryotic type
Pre-60S particles
Helicases
116060551 (ddx21)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
116060551 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116060551
NCBI-ProteinID:
XP_035855296
Ensembl:
ENSSLUG00000016681
LinkDB
All DBs
Position
3:17272679..17284430
Genome browser
AA seq
760 aa
AA seq
DB search
MPSKIIFDTEDQAMEDNVDTVAEAKPLKNKTKEGKKLKKKQLQEQEEQEDPDCEPPAPKK
KKKKDKLAVDQVNGHIDEATDMNGNSNGLETPKKIKKKAEGDTEKKKKKQKKAIEEAETN
GHSTPNTPVQTPIQTPAQSSEDSASDSEKEPEETPEQKEGAFSNFRISQFTIDKLKARGV
SYLFDIQVKTFNSVYDGEDVIAQARTGTGKTFSFAIPLVEKLQRETVQFARGRAPKILVL
TPTRELAIQVAKDFKDITKKLALTCFYGGSSYNPQLEAIRNGIDILVGTPGRIKDHLQNN
KLDLSKLKHVVLDEVDQMLDMGFAEQVEEILSSSYQKDSDSNPQTLLFSATCPPWVYEVA
KKYMRPECKHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVIQVYSGSHGRTIVFCE
TKKEANELSLNASIKQSTQSLHGDIPQKQREITLKGFRNGGFEVLVATNVAARGLDIPEV
DLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVENKAGITFRRVGVP
TANDIIKSSSKDAVRFLDSVPAAAIGYFRASAEKLIEERGAVDALAAALAHISGATSLEQ
RSLLNSDAGYTTVQMVCSQEMHNLGYAWKSIKEQLGEEFENHIQRMTFLKGRTGVCFDVP
ADKVKEIQDSWKDGRRWQLTVATELPELEEKQFSNRGDRGFGGGSRGDRGGGGFRGGRGR
GFGGNGGRSNGFRNGGGGGGGGYSNNRGGHKRNFSQAFDY
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaaaaatcatctttgacaccgaagatcaagccatggaggacaatgtggacact
gtcgcggaggctaaacccctaaagaacaagaccaaggagggcaagaaactgaagaagaag
cagttgcaggaacaggaagagcaagaggacccggactgtgaacctccagcaccgaagaag
aaaaagaaaaaagacaagctggcagtggaccaagtgaacggccacatagatgaggccaca
gacatgaacggcaacagtaacggtcttgaaacaccaaagaagattaagaaaaaagccgaa
ggagacacagagaaaaagaagaagaagcaaaagaaagcaatcgaagaggcagaaaccaac
ggacattccaccccaaacacccctgtccagacgcccatccagacaccagcacagtcaagt
gaagactctgctagtgacagcgaaaaagaaccggaggagacaccagagcaaaaggaaggg
gccttctccaacttcaggatctcccaattcaccattgataaactaaaagctcggggagtc
tcttacctgtttgacattcaggtgaagacatttaattctgtatacgatggagaggatgta
attgcccaagcccgaacaggaacgggaaagactttttcatttgccatccctttggtggag
aagctccagagggagacagtgcagttcgccagaggccgcgctcccaagatactggtgtta
acgccaaccagagagttagctatccaggtcgcaaaggactttaaagacatcaccaagaaa
ctggctctcacctgtttctatggaggcagctcatacaatccacagctcgaagctatccgt
aatggtatcgatattttggtcggcacccctggtcgcatcaaagaccacctccagaacaat
aaactggacctctctaaactgaaacacgttgttctggatgaagtagaccaaatgctggac
atgggatttgcagaacaggttgaagagattttgtcttcatcatatcagaaagactctgac
tccaacccacagactcttctgttttcggccacctgccccccctgggtctacgaggttgcc
aagaaatacatgagaccagagtgcaaacatgttgatctgattggcaagaaaacacagaaa
gctgcaacaactgtagaacatctggccatagcgtgccactggtcacagcgtgcagccgtg
atcggagatgtgatccaggtttacagcggcagccatggcagaaccattgtgttctgtgag
acaaagaaagaggccaatgaactttcccttaatgcatccatcaaacagagcacccagtcc
ctccatggtgatattcctcagaaacagagagagattacgctgaagggcttcaggaatggg
ggttttgaggttctggttgccaccaatgttgcagcccgtggattagacatccctgaagtc
gacctggtggtccagtgttctccacccaaggatgtggagtcatacatccatcgttcagga
cgtacgggcagggcaggcaggactggagtctgcatctgtttctaccagaggaaagaggag
gaccagctgcgctacgtggaaaacaaagcaggtatcacattcagacgagttggcgtcccc
accgccaacgatatcatcaagtcatcaagcaaggatgctgtcaggtttctggactctgtt
ccagctgcagccatcgggtacttcagagcgtcagctgagaagctgattgaggagagagga
gcagtcgatgcactagctgctgccctggcacatatttctggagccacaagtctagagcag
aggtcactgctcaactctgatgctggttacacaactgtgcagatggtgtgttctcaggag
atgcataatctgggttacgcctggaaatccatcaaagaacaacttggagaagagtttgag
aaccacattcagagaatgaccttcctcaaaggcagaacgggagtttgttttgatgttcca
gctgacaaagtcaaggagattcaggacagctggaaggacggtcgccgttggcaactgact
gtagccaccgagctcccagagctggaggagaagcagttcagtaaccgtggcgacagaggc
tttggcggtggtagccgcggcgatagaggaggaggagggttcagaggtggaagggggcgg
ggctttgggggaaatggtggccgtagtaacgggttccggaatggtggcggcggtggtggt
ggtggctatagcaacaacagaggaggacacaaacgcaacttcagtcaagcttttgattat
tga
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