Sander lucioperca (pikeperch): 116060817
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Entry
116060817 CDS
T07345
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116060817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sluc03021
]
116060817
03036 Chromosome and associated proteins [BR:
sluc03036
]
116060817
Transcription machinery [BR:
sluc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116060817
Coactivators
SAGA/TFTC/STAGA complex
116060817
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
116060817
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
DUF3730
Motif
Other DBs
NCBI-GeneID:
116060817
NCBI-ProteinID:
XP_031170424
LinkDB
All DBs
Position
7:21216958..21248131
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AA seq
938 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLGDRKAPAASYSDGKRDAAPTVAGQFSGK
VREQVGSVEPQQGHPKAALLTQEPGANVSEPLSGNPLTSSTSSVAAGAVITAGASLQTVG
VGASPVISPGTLPTQPGAASFQRTAVLGSSVLAPGSSATEAIRTSSPGLQSLNGGGAGAG
AVKLGANTVISTVSAGGSTIISSMASQPNNFPPQSTAASPAAGTPQRLPGPVNGVDPKAA
LPVPQHGVPSPAALPQQGVPSPAASSSQTGSSTAAVTLKPAVNGVGQPAVALVRPPGTVV
ASIQQQRPGLVASPNRAAAPQQLAVRPQQQTIQLPPGFSMPPGMVLVRTETGQLVMVPQQ
VLAQAQAKTQQAQAQAQAQANLSQRPAAPTAGTAIRLTTAATAPQTVRLATPVQTRMVQS
PSATVQKALSVAPGGAAVSVKMTPQKAQTVITAGGTPVAKPAGVPSAPLTSTTPAPQPTT
PARVTVVSQEMQENVKKCKNFLATLIKLASHNSPSPDTSKNVKALVQDLLDAKIEPEEFT
TRLQAELKSSPQPYLIPFLKKSLPTLRQSLLSNQQSLVTPSTSAPPPPAAAIATAIRPRL
PVSPASSAVRMAAPLANTLAVNRGVQPVQTRSPVVFSQTLRPQGTLMSRPMTIISRGLVT
PAATANQRKLSDPGGGTFRDDDDINDVASMAGVNLNEENARILATSSELVGTKIRSCKDE
AFLPPGLLHRRIMDTAKKLGVSEVPLDVVNLVSHATQSRLRALLEKVSAVAQHRSDAGKD
EEHHEPSSDVRSQLRFFEQLERMEKQRKDEQEREILLKAAKSRARQEDPEQARLKQKAKE
MQQQELAQIRQRDANLTALAAIGPRKKRKMGSPGGGASGTEVASGSAAGSPAAAASASSS
RQQLRQRITRVNLRDFIFCLEQERCTARSLTLYKALLK
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcaatgaggtggatgagaaagca
gttagcgacttagttggctctctggagtctcagctcggcgacagaaaggctcccgccgct
tcttattccgacgggaaacgggacgcagcgccaacggtcgccgggcagttctcagggaaa
gtgcgcgagcaagtggggtctgtggagccgcaacaagggcatccaaaagcggcattactg
acccaggaacccggcgctaacgtttctgagccgctctccgggaaccccctcacctcttct
acctcctctgtcgccgccggggccgtgatcaccgccggagcgagtctacaaacagttgga
gtcggagcatctccagttatctccccgggaactttgcccactcagcccggcgctgctagc
ttccaacggacggctgttctgggctcgagcgttctggctccgggctcgagcgcgacggag
gcgatcaggacctcttctcccggattacaaagtttaaacggcggcggcgccggcgccggg
gctgtaaagttgggggccaacacggtgataagtactgtcagtgccgggggatccacgatc
atatcctccatggcttcacagcctaataacttccctcctcagtccacagcggcgtctccc
gccgccggtacgccgcagaggctccccggcccggtgaacggagtcgaccctaaagctgcc
ctcccggtgccccagcacggcgtcccttccccggcagcgctgccccagcagggcgtccct
tccccggcagcctccagctctcagactgggagcagcacggccgccgtcaccctaaagcca
gcggtgaacggcgtgggccagccggcggtggcgctggtcaggccgccgggcaccgtggtg
gcctccatccagcagcagaggcccgggctggtggcgagccccaacagagccgctgctcct
cagcagctcgctgtcaggccgcagcagcagaccatccagctaccaccaggcttctccatg
cctccagggatggttctggtccggacggagacgggccagctggtgatggtcccccagcag
gttctggcccaggcgcaggccaagacgcagcaggcccaggcccaggcgcaggcgcaggcc
aatctcagccagagaccagcagcgccaacggccgggaccgccatccggctcaccaccgcc
gctacggctcctcaaacagtccgcctggccacccccgttcagaccagaatggttcagtca
ccctccgccaccgtacagaaggctctctcggtcgcgccgggcggagccgcggtgtcggta
aagatgaccccccagaaggctcagacggtgatcaccgcgggggggacgccggtggccaaa
cctgccggcgtcccatccgccccgctgaccagcaccacgcccgccccccagcccacgacg
cccgccagagtcaccgtggtgtcgcaggagatgcaggaaaacgtgaagaagtgtaagaac
ttcctggccactctgatcaagctggcgtcgcacaactctccctccccggatacctccaag
aatgtcaaggccctggtgcaggacctgctggatgcaaagattgagccggaggagttcacc
actcggctgcaggctgagttgaagtcctccccacagccctacctcatccccttcctcaag
aaaagcctcccgacccttcgccagtctctgctcagcaaccagcagtctctggtgacaccc
agcacgtcggccccgcccccccccgctgccgccatcgccaccgccatccggccacggctg
cccgtcagcccggccagcagcgccgtcaggatggccgctccgctcgccaacactctggct
gtaaaccgaggagtccagccggttcagactcgttctccggtcgtcttcagtcagactctc
agacctcaggggactctcatgagtcgacccatgacgataatcagcagaggtctggtgacg
ccggcagctacggccaatcagaggaagctgagcgacccggggggcgggaccttcagagat
gacgacgacatcaacgacgtggcgtccatggccggcgtcaacctcaacgaggaaaacgcc
cgtatcctagcgaccagctcggagctggtggggacaaagatccgctcgtgtaaagacgaa
gccttcctgccccccgggctgctgcatcgccgcatcatggacactgctaagaagctggga
gtgagcgaggttcctctggacgtggtgaacctggtgtcccatgccacccagtcccgactg
cgtgcgctgctggagaaagtatcagccgtggctcagcaccgctcagacgccggcaaggat
gaagagcatcatgaaccctcgtcagatgttcgctctcagcttcggttcttcgagcagctg
gagcggatggagaaacagaggaaggacgaacaggagagagagattctgctgaaagctgcc
aagagtcgagctcggcaggaggatcctgaacaggctcgtctgaaacagaaagctaaagag
atgcagcagcaggagttggctcagatcagacagcgagacgccaacctcacggctctcgcc
gccatcgggccgcgcaagaaacgcaagatgggctcaccgggaggcggcgcgtctggcacg
gaggtggcgtccggctcggctgcaggctccccggcagcggcggcgtctgcctcgtcgtcc
cggcaacagctgcgtcagcggatcacacgagttaacctcagggacttcatcttctgtctg
gagcaggaacgctgcactgcgcgctcgctcacgctctacaaggcgctgctgaaatga
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