Sander lucioperca (pikeperch): 116061021
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Entry
116061021 CDS
T07345
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116061021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116061021
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116061021
Spliceosome [BR:
sluc03041
]
Complex C
Other components
Step II factors
116061021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
Flavi_DEAD
T2SSE
TsaE
PhoH
ABC_tran
Sigma54_activ_2
Presenilin
Motif
Other DBs
NCBI-GeneID:
116061021
NCBI-ProteinID:
XP_031170708
Ensembl:
ENSSLUG00000010748
LinkDB
All DBs
Position
22:complement(22755168..22767453)
Genome browser
AA seq
1216 aa
AA seq
DB search
MADGGVDELSQLEYLSLVSKVCTELDNHLGISDKDLAEFVIDLAEKQPTFDGFKALLLQN
GAEFTDSLIGNLLRLIQTMRPPSKSSTSKVSEALVKPKTEKERLKELFPALCRANDPVPK
KLLDEDDVKVAADAMKELEMFMPSVSGTDSKSSKSRSEKSRRHSRSRSRERDRHRDRDRD
RDRDREKDRKRRHRSRSRSRSRDRDRHRDGDRDKDRGKRRDKSSRWSERSPSPKKDQDKD
SDRWKDKHVDRPPPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGR
VANVADVVSKGQRVKIKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNVGPDGGDEISMR
NPDRPSNLNLGHPPELEQDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDDETG
ILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAK
ERRELKQAAREAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFG
GNKASYGKKTQMSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAE
AGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDG
MLLRECLIDSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVK
FSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDVLVFLTGQE
EIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAET
SLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYT
ERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTL
GALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDK
QALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLG
IMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNR
QPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRLEPLYNR
YEEPNAWRISRAFRRR
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atggcagacggcggagttgacgagctatcgcagcttgaatatttgtctttggtgtccaag
gtctgcacggagcttgacaaccatttgggaataagtgacaaagatttagctgaatttgtc
atcgaccttgctgaaaaacagccgacctttgatggattcaaagctcttttgcttcaaaat
ggagccgaattcacagattctctcattggtaatttgctcaggctcattcagactatgcga
cctccatccaagtcatctacgagtaaagtttctgaggctttggtcaagccgaagacagaa
aaggaaaggttgaaggagctgtttcctgcactgtgtagagcaaatgatccagtgccaaag
aagctactagatgaagatgatgtgaaggtagcagctgatgccatgaaagagctggagatg
tttatgcccagtgtcagtgggacagactccaaaagcagcaagagcaggtcagaaaagagc
agacgccacagcagaagtcgaagcagagaaagagacaggcacagagatcgggacagagat
cgggacagagatcgggagaaggacaggaagagacggcatcgctcaaggtccaggtctcgc
tccagagaccgtgatcggcaccgagatggagacagagacaaagatcgcggcaaaagaaga
gacaaatcttcccgctggtctgagcgctcacctagccccaaaaaagaccaagacaaagac
tctgaccgctggaaggacaaacatgtggaccggccaccaccagaggaaccttcggttggg
gacatatacaatggcaaagtcaccagtattatgcagtttggttgctttgttcagctggag
ggattaaggaaacgatgggagggtttggtccacatttccgagctgcgtagagagggccgt
gtggccaacgtggctgatgttgtcagcaaaggccaaagagtcaagatcaaggttctctcg
ttcaccggctctaagaccagcctcagtatgaaggatgtggaccaggagacaggagaagac
ctgaaccccaacaggaggaggaacgtaggcccagacggaggagatgagatctccatgaga
aaccccgaccggccgagcaacctgaacctgggacacccccctgagctggagcaggacgac
accttggagcgcaagaggctcaccaaaatttctgacccagagaagtgggagatcaaacag
atgattgctgccaacgtcttgtccaaagaagagttccctgattttgatgacgagacaggg
atccttcctaaagttgatgatgaagaggatgaagatttggaaattgagctggttgaagag
gagccccccttcttgaggggacacaccaaacaaagcatggacatgagccctgtcaagatt
gttaagaatccagatggttctctgtctcaagcggccatgatgcagagcgctctggctaag
gagagacgagagttgaagcaggctgcacgagaggcagagatggactccatccccatgggg
ttgaataaacactgggtcgacccgctgccagatgttgatggtaggcagattgcagctaac
atgagaggcattggcatgatgcctaatgacatcccggagtggaagaagcatgcttttgga
ggcaacaaggcctcttatggaaagaagacccaaatgtccatcctggagcagagggagagc
ctgcctatctacaagctgaaggagcagctcattcaggctgtccatgacaaccagatcctg
attgtgattggagagacggggtctggtaagaccacgcagatcactcagtacctggcggag
gcaggctacaccaccaggggaaagattggctgtacgcagccccgtcgtgtggccgccatg
tcagtggccaagagagtctctgaggagtatggttgctgtctaggacaagaggtgggttac
accatccgttttgaggactgtactagccccgagacggtgatcaagtacatgacggacggt
atgctgttgagagagtgtctgattgattctgaattgggacagtacgccattatcatgttg
gatgaagctcatgagaggacaatccacactgatgttctctttggtttgctcaagaagacc
gtacagaaacgcacagacatgaaactgattgtaacatcagccacgttggacgctgtgaag
ttctctcagtatttctatgaagcgcccatcttcaccatcccaggaagaacttacccagta
gaggttctctacaccaaagaacctgagacagactacctggatgccagtctcatcacagtc
atgcaaattcatctgaccgaacctccaggtgacgtcctggtgtttctgactggacaggaa
gagatcgacaccgcttgtgagatcttgtacgagcgaatgaagtcactggggcctgatgtt
cccgagctgattattcttccagtttactctgccctgcctagtgagatgcagacaagaatc
tttgacccggctcccccaggcagcagaaaggtggtcattgccacaaacattgcagaaaca
tctctgaccatcgatggaatctattatgtagtggaccctggttttgtcaagcaaaaagtg
tacaactcgaagactggcattgaccagctggttgtgactcctatctcacaggcccaggcc
aagcagagggctggtcgagccggcagaacaggcccagggaagtgttacaggctctacacc
gagagagcctacagagacgagatgctgaccaccaacgtgcctgagatccagagaaccaac
ttggctagcactgtgctgtctctgaaggcaatgggcatcaatgacctcctgtcttttgac
ttcatggacgctccacccatggagactctgatcacagccatggagcagctctacactctg
ggagctctggatgatgaaggcttactcacacggctgggcagaaggatggcagagtttccc
ctggagcccatgctgtgtaagatgttgatcatgtccgtccatctgggctgcagtgaagag
atgctcaccatcgtgtcaatgctgtctgtgcagaacgtcttctacaggcccaaggacaag
caggccttggccgaccagaagaaggcaaagtttcaccaacctgagggggatcacttgacc
ctgctggcggtttacaactcctggaagaacaacaagttctccaacccctggtgttatgag
aacttcatccaggctcgctccctgcgcagagcccaggacatccgcaaacagatgctgggt
atcatggacagacataaactggatgtggtatcctgtggcaaagccacagtacgggtccag
aaagccatctgcagcggcttcttcaggaatgcagctaaaaaggatcctcaagaaggctac
cggacccttatagaccagcaagttgtatacatccacccctccagtgctctgttcaaccgc
cagcctgagtgggttgtgtaccatgagttggtgctgaccaccaaggagtacatgcgggag
gtgaccaccatcgaccctcgctggctggtggagttttcacctgccttcttcaaagtgtcc
gaccctacacgcctcagcaagcagaagaaacaacagcgcctcgagcctctgtacaaccgt
tacgaggagcccaacgcttggagaatctctcgtgccttcagacgccgttga
DBGET
integrated database retrieval system
