Sander lucioperca (pikeperch): 116061156
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Entry
116061156 CDS
T07345
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b isoform X1
KO
K06236
collagen type I alpha
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04510
Focal adhesion
sluc04512
ECM-receptor interaction
sluc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116061156 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116061156 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116061156 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sluc00536
]
116061156 (col1a1b)
Glycosaminoglycan binding proteins [BR:
sluc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116061156 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
116061156
NCBI-ProteinID:
XP_031170951
LinkDB
All DBs
Position
22:complement(21564645..21586055)
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AA seq
1453 aa
AA seq
DB search
MFSFVDIRLALLLSAAVLLARGQGEDDSLFGSCSLDGQLYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTSDCDDPIIPDGECCPICPDTAVDPPVIPDGNEPTKGDVGPKGDPGPPGP
PGNDGLDGQPGVPGPPGPPGPPGLGGNFSPQMSYVDHSKSSGGGTVPGPMGPMGSRGVPG
PPGSSGPQGFTGPPGEPGEPGASGAMGPRGPAGPPGKNGDDGEPGKAGRPGERGAAGPQG
ARGFPGTPGLPGIKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGIPGAMGARGLPGERG
RPGPPGPAGARGNDGNTGAAGPPGPTGPAGAPGFPGGAGAKGETGPAGARGSDGPQGSRG
EPGNPGPSGPAGAAGAPGSDGQAGAKGSPGAAGIAGAPGFPGARGPAGAQGAVGAPGPKG
NNGDHGPSGPKGEPGAKGEPGPAGVQGLPGNSGEEGKRGGRGEPGGAGPRGPPGERGAPG
ARGFPGADGAAGGKGAPGERGSNGALGAQGATGESGAPGAPGAPGSKGMTGSPGSPGPDG
KTGPSGAPGQDGRPGPAGPVGARGQPGVMGFPGPKGVAGENGKPGERGPGGPAGAVGAPG
KDGDVGAPGPSGVAGPAGEKGEQGPVGSPGFQGLPGPQGATGETGKPGEQGGPGEVGPPG
PSGPRGDRGFPGERGAPGVAGPTGGRGAPGPAGNDGAKGEPGAAGAPGAGGAPGMQGMPG
ERGASGLPGAKGERGDAGTKGGDGAAGKDGVRGMTGAIGVPGPQGAQGEKGESGAVGVAG
PTGPRGAPGERGETGPSGPAGFAGPPGADGQPGAKGESGDTGPKGDAGAPGPSGPVGGAG
PQGPAGPAGAKGARGGAGSPGATGPPGPAGRVGPPGPPGAGGAPGPAGPVGKEGARGARG
ETGPAGRPGEAGASGAPGLSGEKGSPGADGSPGAPGTPGPQGLLGQRGIVGLTGQRGERG
FSGLPGPSGEPGKQGPPGIHGARGPPGPAGPPGLSGATGEAGREGSAGHDGAPGRDGATG
PKGNRGETGQAGPPGPPGAPGPPGSAGPSGKTGDRGESGPAGAAGPAGPAGVRGPAGPAG
AKGDRGEAGEAGDRGHKGHRGFTGMQGMPGPAGASGDRGPAGASGPAGPRGPSGSSGAPG
KDGMNGLPGPIGPPGPRGRNGEMGPSGPPGPPGPAGPPGPPGSGFDFISQPIQEKAPDPF
RGGHYRADDPKVIQDRDMEVDTTLKTLTQRVEKIRSPDGSQKSPVRMCRDLKMSHPELKS
DLYWIDPNQGSSLDAIKVHCNMETGETCIYPSESSVPMKNWYISKNIREKKHVWFSESMT
GGFQFQYGSDGADPEDVSIQMAFMRLMSNQASQNMTYHCKNSIAYMDSATGNLKKALLLQ
GSNDVEIRAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPD
QEFGVEVGPVCFL
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgctgttgctcagcgcagcagtgcttttggcg
agaggtcaaggcgaggatgatagcttatttggcagctgctcattagacggacagttgtac
aacgacaaggatgtatggaaaccagagccctgccagatttgcgtctgcgacagtggaacc
gtcatgtgcgacgaggtgatctgtgaagacacatccgactgcgacgaccccatcatccca
gacggagagtgctgccctatctgccctgacaccgcggtggacccacccgtgattccggat
gggaatgagccaacaaagggagacgttggccccaagggagacccgggtcctcctggtcct
cctggcaatgatggactggatggacagcctggtgttcctggccctcccgggccccccggc
ccccctggccttggcggaaacttctctcctcagatgagctatgttgaccactccaaatct
agcggcggcggaactgtccctggcccaatgggtcctatgggtagtcgtggtgttcctgga
ccccctggctcctctggtccccagggtttcactggcccccctggtgagcccggtgagccc
ggtgcttctggtgccatgggtccccgtggtcctgccggaccccctggaaagaacggagat
gatggtgagcccggcaaagctggtcgccccggtgagcgtggagccgctggcccccagggt
gctcgtggattccccggaacccccggactccccggcatcaagggacacagaggattcagc
ggtctggatggagctaagggagacgctggacccgctggccccaagggagagcctggttca
cctggtgagaacggtatccccggcgccatgggtgcccgtggtcttcctggtgagagaggt
cgccctggacctcctggccctgctggtgctcgtggtaatgatggcaacactggtgctgct
ggaccccctggacctactggacctgctggtgcccctggcttccctggcggtgctggtgct
aagggagagactggacctgcaggagcccgtggaagtgatggaccccagggatcccgtggt
gagcctggtaacccaggaccttctggacccgccggagctgctggcgcccccggatctgat
ggccaagctggtgctaagggttctcctggtgctgctggtatcgctggtgcccctggtttc
cctggcgctcgtggtcctgctggagctcagggagctgtcggtgctcctggtcccaagggt
aacaatggtgaccacggtccctctggtcctaagggagagcccggtgccaagggagagcct
ggccccgctggagttcagggacttcctggcaactctggtgaggagggcaagagaggagga
cgtggagagcccggtggtgctggaccccgtggaccccctggagagcgtggcgcccctggt
gctcgtgggttccctggtgctgatggagctgctggtggcaagggagcccccggtgagcgt
ggttccaatggcgcattgggagctcagggagccactggtgagtctggagcccctggtgct
cctggcgcacctggatccaagggtatgactggtagccccggaagccccggccccgatggc
aagactggaccttctggtgcccctggacaagatggacgccctggacctgctggccctgtt
ggagccagaggacagcctggagttatgggattccccggacccaagggagtcgctggtgag
aatggtaagcccggtgagagaggtcccggtggtcctgctggcgctgttggtgctcctggc
aaagatggtgacgttggtgctcctggaccttctggtgtcgctggacctgctggagagaaa
ggagagcagggacctgttggttctcccggattccagggtcttcctggaccccaaggtgct
actggtgagactggcaagcctggtgagcagggcggccctggtgaggttggaccccctggc
ccatccggaccaagaggcgacagaggtttccctggtgagcgtggtgcccccggcgtcgcc
ggcccaactggaggacgtggtgctcccggccctgctggtaacgatggagccaagggagag
cctggtgctgctggtgcccccggagctgggggagcccccggtatgcagggaatgcccggt
gagcgtggagcttctggtctccccggtgccaagggagagagaggtgatgctggaaccaag
ggaggtgatggtgctgctggcaaagatggcgtgcgtggcatgactggtgctattggagtc
cctggaccccaaggtgctcagggtgagaagggtgagtctggtgccgttggagttgctgga
cccaccggtcctcgtggtgcccctggcgagcgtggagagaccggaccctctggacctgct
ggattcgctggacctcctggtgctgatggtcagcctggtgccaagggagagagcggggac
actggacccaagggagacgctggtgctcctggtcctagtggacctgttggaggtgctggt
cctcagggacctgctggtcccgctggagctaaaggtgctcgtggtggtgctggatcccct
ggtgctactggtccccccggacctgctggaagagttggaccccctggcccccctggagct
ggtggagcccccggacccgctggaccagtcggcaaagaaggagcaagaggagcacgtggt
gagaccggtcccgctggtcgccctggtgaggctggcgcttctggagccccaggactctct
ggagagaagggatctcctggcgctgatggatcccctggcgctcctggtacccccggaccc
caaggtctccttggacagcgtggtatcgtcggtctcactggacagcgtggagagcgtggt
ttctctggtctgcctggaccatctggtgagcctggaaagcagggacctcctggtattcat
ggtgcccgtggaccccccggacctgctggaccccctggactgtccggtgctaccggagag
gctggtcgtgagggatctgctggtcacgatggtgcccctggtcgtgacggagcaactggc
cctaagggaaaccgtggtgagactggtcaggctggaccccctggaccccctggtgctcct
ggaccccccggaagtgctggcccctctggcaagactggtgaccgtggagagtctggtccc
gctggcgctgctggtcctgctggccctgctggtgtccgtggtcccgctggccctgctggt
gcaaagggagacagaggagaggctggtgaggcaggagacagaggacacaagggacacaga
ggattcactggcatgcagggtatgcccggacctgctggagcttctggagacagaggacct
gctggtgcctccggaccagctggacctagaggaccttctggatctagtggcgcccctggt
aaggatggcatgaacggtctgcccggacccatcggaccccctggacctcgtggtcgcaat
ggagagatgggaccttctggtcctcccggacctcctggacccgctggaccccctggacct
cccggcagtggatttgacttcatcagccagcctattcaggagaaggcacccgatcccttc
cgtggcggccactaccgcgctgacgaccccaaggttattcaagatcgcgacatggaggtg
gacaccaccctcaagaccctgacccagagagtggagaagatccgcagccccgacggttcc
cagaagagcccagtccgcatgtgccgtgacctgaagatgtctcaccctgagctgaagagc
gacttgtactggatcgaccccaaccagggctcctctctggatgccatcaaggtccactgc
aacatggagactggcgagacttgcatctaccccagcgagtccagcgttcccatgaagaac
tggtacatcagcaagaacatcagagagaagaagcacgtctggttcagcgagtccatgacc
ggtggattccagttccagtatggcagcgatggagctgatcctgaggacgtcagcatccag
atggccttcatgcgcctgatgtccaatcaggcctctcagaacatgacataccactgcaag
aacagcattgcctacatggactccgccaccggcaacctgaagaaggccctgcttctccag
ggatccaacgacgtcgagatcagagccgagggcaacagccgcttcacatacagcgtcagc
gaggatggctgcacgtcacacactggcacatggggcaagacagtcatcgactacaagaca
tcaaaaacatcccgcctgcccatcattgacattgctcctatggatgttggtgcacctgat
caggaatttggcgtcgaagttggccccgtttgcttcttgtaa
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