Sander lucioperca (pikeperch): 116061580
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Entry
116061580 CDS
T07345
Symbol
smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116061580 (smarcd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sluc03021
]
116061580 (smarcd2)
03036 Chromosome and associated proteins [BR:
sluc03036
]
116061580 (smarcd2)
Transcription machinery [BR:
sluc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116061580 (smarcd2)
Chromosome and associated proteins [BR:
sluc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116061580 (smarcd2)
PBAF complex
116061580 (smarcd2)
GBAF(ncBAF) complex
116061580 (smarcd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
116061580
NCBI-ProteinID:
XP_031171720
LinkDB
All DBs
Position
22:14328243..14337011
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AA seq
500 aa
AA seq
DB search
MASRGGGFMNLNVNPMNVGHAAGMRMPGMPQPPAGYSRSMNNSPQYQRPGMPPNRVGGPM
GSMGGQLPGPSYGGGNMSMRQGQGMGPPSMDASRKRFLHLHQQQQQEALGGLRRGAKRRK
MADKVLPQRIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPIMQKRKLRIYIS
NTYTPCKPEGEEAEKVSSWELRVEGKLLEEPGKQKKKFSSFFKSLVIELDKELYGPDNHL
VEWHRMPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRASI
MQALWLYIKNNKLQDCHEKEYINCNRYFRQIFGCPRMRFSEIPMKLAGLLQHPDPIIINH
MISVDPTDQKKTACYDIDVEVDDPLKGQMNGFLSSTTNQQEIAALEMKIHETIEYINQLK
TERDFMLSFSNKPQDFIQDWLKSQCRDLKLMTDVTGNPEEERRAEFYQAPWVPEAVGRYV
YSKVQQRRQELEQVLGIRLT
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaagaggaggtggattcatgaatctgaatgtgaaccccatgaatgttgggcat
gctgcgggcatgaggatgccaggtatgcctcaacctccggcgggatactcccggagcatg
aacaactctccccagtaccagcgcccagggatgccaccaaacagagtcgggggccccatg
gggtcaatggggggccagctgcctggtccttcttatggtggtgggaacatgtccatgcgg
caagggcaaggcatggggcctccaagcatggacgcctctaggaaacggttccttcatctg
catcaacagcagcagcaagaggcactgggaggcctaagacgaggggcaaaaagacgcaag
atggctgacaaggttctcccgcagaggatccgagacctggtcccagagtcccaggcctac
atggatctcttggcctttgaaaggaaactggatcagaccatcgcccgaaagcgtatggag
atccaggaagccatcaagaagcccattatgcaaaaacgcaagcttaggatctacatttct
aacacgtacaccccctgcaagccagagggcgaggaggcagagaaggtgtcctcttgggaa
ctgagagtggagggaaaacttctggaggaacctggcaagcagaagaagaagttctcatct
ttcttcaaaagcctggtgattgagctcgataaggagctctatggacctgacaaccattta
gtagagtggcacagaatgcccaccactcaggagacggatggtttccaggtcaaaaggccc
ggcgacgtgaatgttaaatgcactcttctgctcatgctcgaccaccagcctccacagtac
aaactggacccacggttggctcgtctgctgggtgtgcacacacagacgcgggccagcatc
atgcaagctctttggctctacatcaagaacaacaagctgcaggattgtcacgagaaggag
tacatcaactgcaaccgctatttcagacagatcttcggctgtcctcgaatgaggttctcc
gagattcccatgaaactggccggcctgctgcagcaccctgaccccatcattatcaatcac
atgattagtgtggacccaacagatcagaagaagacagcgtgctatgacattgatgtggag
gtggatgacccactgaagggtcaaatgaacggtttcctgtcctctacaaccaaccaacag
gaaattgctgcgctggagatgaagatccatgagacgattgagtacatcaaccagctgaag
accgagagagactttatgctgagcttcagcaataaaccacaggacttcatccaagactgg
ctcaagtctcagtgcagagatctgaagttgatgacggatgtgacaggaaacccagaggag
gagaggagggctgagttctaccaggctccctgggtaccagaggcagtgggcagatacgtt
tactccaaagtgcagcagagaagacaagagttggagcaggtgctggggatccgactcacc
taa
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integrated database retrieval system
