Sander lucioperca (pikeperch): 116061893
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Entry
116061893 CDS
T07345
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sluc03021
]
116061893 (taf1b)
Transcription machinery [BR:
sluc03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
116061893 (taf1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
DUF5816
Motif
Other DBs
NCBI-GeneID:
116061893
NCBI-ProteinID:
XP_035851630
Ensembl:
ENSSLUG00000018279
LinkDB
All DBs
Position
19:2383985..2402293
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AA seq
639 aa
AA seq
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MDEEQTAGYREPCGVCSAVDWGVSDEGRFYCRSCHNVIERTREVVDPTFTPGSSRISTIG
RGTRTKRPERGRQWVICEGFQFILRNQANALLKLGVSPRFKDEVLCQLWRIYLQKSRQAY
TNNPVRTATFKVRGQDSDSDSAAEMSVLSASETDGDTNASSTAGSIAGSSSDWSQCSGSL
DAASYLSARLRRSRHGLMSMKKTLALLHLALVWIQEPLTLSDLLRLVNEGHVPYVNAYEE
LPEEMKLKGKDALIFRVESVPSHRAVHKEAQTLILFLQLPAFPPISQQSLLHPALLSLRY
LMDANLPDDLHPWVCRVMECAGMADQALHTFNRLLRPVLPRYDLQTAALIIVTMKLVFGL
DDHTEWDLSNEAADQDATGNAFSVRRWFRLVQTALTSAQRRREQHVARKQWTARKPLHPN
SKKKCVVMKRKRIAEQLQICFEKLSSRPAGAEQDAPSSFRFCWGDGDGADGPSMHQQQLD
AAVTLQRDVLTPSNSTYWHPSLRACKPRKCRSHYSAVEDTLPRSFVWLLRLFCFLLDVPP
ESLYEETLRTERRLTGHRRRRNREEEEGEERGTGRKRRKRRGKREEQGGRGGRGGGREKN
REDVSMVTGVVTWNDHESEDEDAERTKTVWSDLGAANGR
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagagcaaacggccgggtacagggagccctgtggtgtgtgttcagcggtggat
tggggtgtatcagacgaggggcgtttctactgcagatcctgccacaacgtcatcgagaga
accagagaggtggtggaccccaccttcacgcccggctcctcccggatctccaccatcggc
cgaggaaccagaaccaagaggcccgagcgcgggcgccagtgggtgatctgcgagggtttc
cagttcatcctgagaaaccaggccaacgctctgctcaaactgggagtcagtccacgattc
aaggatgaagtgctgtgtcagctttggagaatctacctgcagaagagtcggcaggcgtac
accaacaacccagtgaggaccgccacgtttaaagtgcgaggtcaggactctgactctgac
agtgcagctgagatgtctgtcttgtcggccagtgagacggacggagacaccaacgcgtcc
agcactgccggctccatcgcagggagctccagtgattggtcgcagtgttcggggtctctg
gacgccgccagctacctgtcggcccggctcagacgcagtcgccacggtctgatgagcatg
aagaagactctggctctgctccacctcgctctggtctggatccaggagccactgacgctc
agcgacctgctcaggttggtgaacgagggtcacgtcccgtacgttaacgcctacgaggaa
cttcctgaggagatgaaactcaaagggaaagacgctctcatcttcagagtcgagagtgtc
ccgtcccaccgggcggtgcataaggaggctcagactctgattctgttcctgcagcttcct
gcttttcctccaatcagccagcagagtctgctacacccggccctgctcagcctgcgctac
ctgatggacgctaatctgcccgacgatctccacccgtgggtgtgccgggtgatggagtgc
gccgggatggcagatcaagcgctccacacgttcaaccgcctgttgcggcccgtcctgccg
cgttacgacctccagaccgccgcgctcatcatcgtcaccatgaagctcgtcttcggcctc
gacgaccacacagaatgggatttatcgaatgaagcagccgaccaggacgccacaggaaat
gcgttcagcgtgcggcggtggttcagactcgtgcagaccgccctgacctcagcgcagcgg
aggagagagcaacacgtcgccaggaaacagtggaccgccaggaaacctctccacccgaac
agcaagaagaaatgtgtggtgatgaaaaggaaaagaatagcagagcagttgcagatctgt
tttgagaagctgtcctcccgccctgcgggcgccgagcaggacgccccgtccagtttccgg
ttctgttggggcgacggggacggagcggacggtcccagcatgcaccagcagcagctggac
gcggcggtgactctgcagcgggacgtcctgactccatctaactctacgtactggcacccc
tcgctccgagcctgcaagccccggaagtgtaggagtcactactctgcggtggaggacacg
ttgccgcggtccttcgtctggctgctgcgtctcttctgcttcctgctggacgtcccgcca
gagagtctctacgaggagacgctgaggacagagagacgcctcacaggacacaggaggagg
aggaacagggaggaagaggagggggaagagagaggaacagggaggaagaggaggaagagg
agggggaagagagaagaacagggaggaagaggaggaagaggagggggaagagagaagaac
agggaggatgttagtatggttacaggtgtggttacctggaacgaccacgaaagcgaggat
gaggacgccgagaggacaaagaccgtctggagtgatttaggggctgctaacggacgctaa
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