Sander lucioperca (pikeperch): 116062121
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Entry
116062121 CDS
T07345
Symbol
zgc:158828
Name
(RefSeq) probable ATP-dependent RNA helicase DHX35
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
sluc
Sander lucioperca (pikeperch)
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sluc03041
]
116062121 (zgc:158828)
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116062121 (zgc:158828)
Spliceosome [BR:
sluc03041
]
Complex C
Other components
Complex C specific factors
116062121 (zgc:158828)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
ABC_tran
AAA_22
Cas3-like_C_2
AAA_19
nSTAND3
AAA_30
AAA_23
Motif
Other DBs
NCBI-GeneID:
116062121
NCBI-ProteinID:
XP_031172538
Ensembl:
ENSSLUG00000004014
LinkDB
All DBs
Position
12:25239099..25247652
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AA seq
716 aa
AA seq
DB search
MTSSTRKEKKICDVETKMAAPLSTMKFWKPGSEAPGISEERELNTETTGSPIIFNPHTAL
SIEKQRQKLPVFKHRNNILYLVESFQTVIIVGETGCGKTTQLPQYLLEAGWATEGKVIGV
TQPRRVAAISVANRVAEERGALVGHEVGYTIRFDDCSDPHATRIKFLTDGMLVREMMADP
LLKKYSVLMLDEAHERTMYTDIAIGLLKKIQKKRQDLRLIVASATLDAKKFHDFFNLNES
GDPNKDTCGILTVEGRTFPVDVFYTVSPVPDYVKATVETVLKIHETEDDGDVLAFLTGQE
EVEKVVSLLQDQARSLSRYGMKKHLRILPMYSGLPYAEQMKVFERTPNSVRKVVVATNIA
ETSITINGVVFVIDCAFVKLRAYNPRTAIESLVVTPISKASASQRAGRAGRNRPGKCFRL
YTEEDFEKLPASTVPEMQRTNLAPVILQLKALGIDNVLRFSFLSPPPAQTMVQALELLYA
LGGLDHYGRLTDPMGVRMAEFPLSPMFAKMLLESGNFGCSKEIVTIAAMMQIQNIFVVPS
NQKKAAAREHRKFAVAEGDHLTMLNVYEAFIKHQKSSQWCQEHFLNYKGLLRAVTVREQL
RRLMNKFKVPRTSSEGDPDVILKCIVYGFFANAARIHHSGSYRTLRDDRELHIHPNSVLF
GEKPPKWVVFNEVVQTAKYYMRDVTAVESSWLVELAPHFYKQAKHGSLASKRSRVL
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgtctacgcggaaagaaaaaaaaatatgtgacgtagaaaccaagatggcggct
cccctttccacgatgaaattttggaagccggggtctgaggctccgggaatctcagaggag
cgggagctcaacacagagacaaccggctcccccatcatcttcaacccgcacacagccctc
tccatagagaaacaacgacagaaactccctgttttcaagcacagaaacaatatcttgtac
ttggtggagagcttccagactgtcatcatagttggtgagacaggatgtgggaaaacaacg
cagttacctcagtacctgctggaggctggctgggcgacggaggggaaggtgattggagtg
acacagcctcgccgtgtggctgccatctctgtagctaaccgtgtagcagaggagcggggg
gccctggtgggacatgaggtgggctacaccatccgatttgatgactgctctgatccccac
gccacaaggatcaagttccttacagatggcatgctggtgcgggagatgatggctgatcct
cttttgaaaaaatacagtgtgttgatgctggacgaagcacatgagagaaccatgtataca
gacatagccattggtctactaaagaagattcagaaaaagcggcaagacctgaggctgatt
gtggcctctgccactctggatgccaagaaattccacgacttcttcaacctgaacgagtcc
ggagatcctaacaaggacacgtgtggaattctgacagtggagggacgtacctttccagtg
gatgtcttctacactgtcagtcctgtcccagactatgtgaaggctacagtggagacagtg
ctgaagatccatgagacggaggatgacggagacgtcctggcttttcttactgggcaggaa
gaggtggagaaagtggtgtcccttctgcaggaccaggccaggtctctgtcacgatacggc
atgaagaaacacctgagaattttgcccatgtactctggtctaccttacgctgagcagatg
aaggtctttgagaggacgcccaactctgttcgcaaggttgtggtggccacgaacatagct
gagacctccatcaccataaatggagttgtatttgtcattgactgtgcatttgtgaagctg
cgagcctataaccctcgcactgccattgaatcactggtggttactcccatctccaaggct
tcagccagccagagggctgggagagccggacgaaaccgacctgggaaatgctttagacta
tacacagaggaggactttgagaaactgcctgcctctactgtgccggagatgcagcgcacc
aatttggcccctgtcattctgcagctcaaagcattaggcattgacaacgtgctgcggttc
agcttcctttctcctcctccagctcagaccatggttcaagctctagagctgctctacgct
ctgggaggtctggaccattacggacgtttgactgatcccatgggtgtgcggatggcagag
tttcctctcagtcccatgtttgccaagatgctcctcgagtcaggaaactttggctgctcc
aaagagattgttaccattgcagcaatgatgcagattcagaatatatttgttgtgccgtcc
aatcagaagaaagctgctgcccgagagcacaggaagtttgcagttgctgagggagaccat
ctcaccatgctgaatgtgtacgaagcattcattaagcaccagaaaagctcccagtggtgt
caggaacacttcctcaattataagggtctgctgcgggctgtgactgtacgagagcagctc
cggcgtctcatgaacaagtttaaggtgccacggacttcaagtgaaggtgaccctgatgtg
atcttgaagtgcattgtatatgggtttttcgctaatgcagcccgcatccaccattctggt
tcctaccggactttacgagacgatcgcgagcttcacatccaccccaactctgtgctgttt
ggagagaaacctccaaaatgggttgttttcaatgaagtggtgcagacggcaaaatactac
atgcgcgatgtgaccgctgtggagtcgtcctggttggtcgagttggcccctcacttttac
aagcaggccaagcatggttcactggctagcaagaggtcccgggtcctctga
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