Sander lucioperca (pikeperch): 116062145
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Entry
116062145 CDS
T07345
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04510
Focal adhesion
sluc04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116062145 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116062145 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sluc00536
]
116062145 (col2a1a)
Glycosaminoglycan binding proteins [BR:
sluc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116062145 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
116062145
NCBI-ProteinID:
XP_031172571
Ensembl:
ENSSLUG00000015542
LinkDB
All DBs
Position
12:29288839..29314845
Genome browser
AA seq
1487 aa
AA seq
DB search
MFSFVDSRTVLLLVAFQVVLLSVVRCQEEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPLIPPGECCPICPADASAPIETIGAKGQKGEPGEIADVVG
PKGPPGPMGPPGEQGVRGEAGAKGDKGNAGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSPGEAGEPGPAGALG
PRGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGESGSAGENGAPGPMGPRGLPGERGRSGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGARGSEGAQGPRGEGGTPGSPGPAGASGNPGTDGIPGAKG
SAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPVGPQG
APGPAGEEGKRGARGEPGTAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGATGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEAGKTGEKGLVGRPGLRGLPGKDGETGAAGPLGPAGPAGERGEQGQPG
PPGFQGLPGPSGAPGEAGKPGDMGVSGEAGVPGAVGPRGERGFPGERGGAGAQGLQGPRG
LPGTPGTDGPKGAIGPAGAAGPQGPPGLQGMPGERGNGGIPGPKGDRGDNGQKGPEGAPG
KDGGRGLTGPIGPPGPSGPNGAKGETGPTGQTGAAGARGAPGDRGEGGPPGPAGFAGPPG
ADGQPGAKGELGETGQKGEAGSSGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGATGFPG
AAGRVGSPGPNGNPGPVGPAGSAGKEGPKGARGDAGPPGRQGDAGLRGAPGAQGEKGEAG
EDGPPGADGPSGPQGLGGSRGIVGLPGQRGERGFAGLPGPSGEPGKQGASGSPGDRGPPG
PVGPPGLTGPAGETGREGTPGSDGPPGRDGATGVKGERGNTGPTGAPGAPGAPGAPGPVG
PLGKQGDRGESGAQGPAGPSGPAGARGMAGPQGPRGDKGESGETGERGQKGHRGFTGLQG
LPGPPGSAGDAGAAGPAGPSGPKGPSGPSGPAGKDGSNGQPGPIGPPGPRGRSGESGPAG
PPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK
SLNSQIETLRSPDGSQKNPARTCRDLKLCHPEWKSGNYWVDPNIGSTADAIKVFCNMETG
ETCVNPSIAEVPKKNWWTSKSNDRKHVWFGETMNGGFHFNYAEDGPVANAASIQLTFLRL
LSTEASQNLTYHCKNSIAYMDQATGNLKKALKLQGSNDVEIRAEGTSRFTYSVLEDGCKK
HTDRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcattccaagttgtttta
ctatccgtggtcagatgtcaggaagaggatgaccaggaggcaggtggctgcatccaggac
ggccagcagtataatgataaggatgtgtggaagcccgagccgtgtcgtatctgtgtgtgc
gacagcggagcggttctgtgtgatgagataatctgcgaggagatcaaagaatgtgccaac
cctctcatcccacctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gaaacgattggtgctaagggccagaaaggggaaccaggagagattgcagatgttgtagga
ccaaaaggaccaccaggccctatgggccccccaggtgagcagggagtccgtggagaagct
ggcgctaagggtgataagggaaatgcaggacctcgtggaagagatggtgagcctggcacc
cctgggaaccccggaccccctggcccacccggaccaccaggacttggagggaattttgct
gctcagatggctggaggttttgatgagaaggccggaggtgctcagatgggtgtgatgcag
ggaccaatgggtcctatgggtcctcgtggcccccctggacctagtggagctcctggacca
cagggtttccaaggtagccctggagaggctggagagcctggtccagctggagcattggga
cctcgtggaccacctggaccttctggaaaacctggaagtgatggcgaggctggcaaacct
ggaaaagctggtgagcgtggacctgcagggcctcagggagctcgtggattccctggaact
cctggacttcctggaatcaaaggacacagaggtcatcctggtctggatggagctaaggga
gaaactggtgctgcaggagccaagggtgagtctggttctgcaggagagaacggcgcccct
ggacccatgggcccacgtggtctgcctggtgagagggggcgttctggagctgctggagct
gcaggagcccgtggaaatgatggcttgcccggtcccgctggtccacctgggcctgttggc
cctgctggagctcccggtttcccaggatctccaggagccaagggagaagctggtcctact
ggagcccgtggatctgaaggagcacagggaccccgcggagagggcggtaccccaggatct
cccggacctgccggagcatcgggtaaccccggtactgatggtattcccggagctaaagga
tctgctggtgcttctggtattgctggtgctcctggattccccggcccccgtggcccacct
ggaccacagggagctacaggacctctggggccaaagggacagtctggagaccctggtctt
cctggattcaaaggtgaagctggaccaaagggagagcttggcccagttggtccccaaggt
gctcctggccctgctggtgaagaaggaaagagaggtgcaagaggagagcctggaactgct
ggaccactcggacctccaggagagagaggagctcctggtaaccgtggtttcccaggtcag
gatggtcttgctggtgctaagggtgcccctggtgaccgtggtgttcctggtgctgctggg
cccaaaggtgctactggagatcctggacgcacaggagaatcaggtctccccggagccaga
ggtctcaccggtcgtcccggagatgctggtcctcaaggcaaagttggaccctctggtgct
tctggtgaggacggtcgcccaggcccacccggcccccagggagcccgtggacagccagga
gtaatgggattccctggaccaaagggagccaatggtgaagctggaaagacaggagagaaa
ggtcttgtgggtcgccctggtctgagaggtctgcctggaaaagatggtgagactggtgct
gctggacctcttggccctgctggacctgctggagagagaggagagcaaggacagcctgga
ccccctggcttccagggtctgcctggaccatctggtgccccaggagaggctggaaaacct
ggagacatgggtgtttctggagaggccggagtgcctggtgctgtcggacccagaggtgaa
cgtggtttccctggtgagcggggtggtgctggagctcagggtcttcagggacctcgtgga
cttcctggaacacctggaacagatggacccaagggagccattggaccagctggtgctgct
ggaccccagggaccccccggcctgcagggtatgcccggagagagaggcaatggtggcatc
ccaggacccaagggagacagaggtgacaatggacagaaaggacctgagggagctcctgga
aaggatggtggtagaggtttgactggtcccattggtcctcctggcccatctggacccaac
ggtgccaagggtgagactggacccactggccaaactggtgctgctggtgctcgtggtgct
cctggtgaccgcggggagggtggtcctcctgggccagctggcttcgctggacctcctggt
gcagatggtcagcctggtgccaagggagagcttggtgagactggacagaagggagaagct
ggttcttctggacctcagggaccatctggtgctcctggacctgtgggacctactggtgta
actggacctaaaggagcacgtggtgctcagggagctcctggtgctactggtttccctggt
gctgctggcagagttggatctcctggccctaatggtaaccctggccctgttggccctgct
ggttctgctggaaaagagggaccaaagggtgctcgtggtgatgctggccccccaggaaga
cagggagacgctgggcttcgtggagctcctggcgcacaaggagagaagggagaggctgga
gaggatggaccccctggtgctgatgggccttcaggtccccagggtctgggcggatctcgt
ggtattgtcggtttgcctggtcagcgtggagagagaggcttcgctggtctgcctggacct
tctggagagcctggtaaacaaggagcttctggttcccctggcgaccgcggacctcctgga
cctgtgggaccccctggacttactggacctgctggagagactggaagagagggtacccct
ggatcagatggacctcctggtagagatggagctactggagtcaagggagagcgcggtaac
accggtcccactggcgcccctggagctcctggtgcccctggtgcccctggacctgtcgga
cccctcggcaagcagggagacagaggagagagtggtgctcaaggaccagcaggaccctca
ggccccgctggagctagaggaatggctggaccccaagggccacgtggagacaagggagag
tctggtgagactggagagaggggacagaagggtcaccgcggtttcactggtctgcagggt
cttcctggacctcctggttccgctggagatgctggagctgccggacctgccggaccaagc
ggacctaagggaccatctggaccatccggacctgctggcaaagacggatcaaatggacag
cctggccccattggaccccctggacctcgtggacgttctggagaaagtggtcctgctggt
cctcctggtaacgccggaccccctggccctcctggtcctcctggccccggcatcgacatg
tctgccttcgcaggtctgggtcagactgagaagtcccctgatcctctcaggtacatgagg
gccgatgaggcctccagttccctgaggcagcatgatgtggaggtcgattccacacttaag
tccctcaacagccagattgagaccctgcgcagccctgacggtagccagaagaaccctgct
cgcacctgcagagacctgaaactgtgccaccctgagtggaagagtggtaactactgggtt
gatcccaacattggcagcacagccgatgccatcaaggtcttctgtaacatggagacagga
gagacctgcgtcaacccaagcatcgccgaggtaccaaagaagaactggtggaccagtaag
agcaatgaccgcaaacatgtctggttcggagagaccatgaatggaggattccactttaac
tacgccgaggatggccctgttgccaacgctgccagtatccagctgaccttcttgaggctt
ctgtccactgaggcatcccagaacctcacttaccactgcaagaacagcattgcctacatg
gaccaggccacaggcaacctgaagaaggctttgaagctgcagggctccaacgatgtggag
atccgcgcagagggcaccagtcgcttcacatacagcgtgttggaggatggctgcaagaaa
catacagaccgatggggcaagactgtctttgagtacaaaacacagaaaacctcccgtctg
ccaatcgtggacattgctcccatggacatcggaggagcggatcaggagtttggagtggaa
gtaggcgcagtctgcttcttgtaa
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integrated database retrieval system
