Sander lucioperca (pikeperch): 116062906
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Entry
116062906 CDS
T07345
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116062906 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sluc03019
]
116062906 (mtrex)
03041 Spliceosome [BR:
sluc03041
]
116062906 (mtrex)
03009 Ribosome biogenesis [BR:
sluc03009
]
116062906 (mtrex)
03016 Transfer RNA biogenesis [BR:
sluc03016
]
116062906 (mtrex)
Enzymes [BR:
sluc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116062906 (mtrex)
Messenger RNA biogenesis [BR:
sluc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
116062906 (mtrex)
Spliceosome [BR:
sluc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116062906 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
116062906 (mtrex)
Ribosome biogenesis [BR:
sluc03009
]
Eukaryotic type
Pre-60S particles
Helicases
116062906 (mtrex)
Transfer RNA biogenesis [BR:
sluc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
116062906 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
116062906
NCBI-ProteinID:
XP_031173541
Ensembl:
ENSSLUG00000015150
UniProt:
A0A8C9Z502
LinkDB
All DBs
Position
14:3457938..3482448
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTTTSKKIPASLTPEIGKVISKNGTDKDAGPSAAVKREADSDG
GEEMVFGKKPRHETVSANDLNLAEFMPQVKVEQVDTVEGCSHEVALPASDDYKPLKPRVG
KAAKEYPFVLDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVV
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPSGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGSGGGKWDPRGRK
GGTRGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNRDDEKRLVEEVFN
NAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETF
AMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKI
KNYEEQYHSIEIPNEEGVVTYFKIRQQLAKLGKEIQEFTHKPKYCLPFLQPGRLVKVKNE
DADFGWGVVVNFCKKSNVKTSADSEPLYVVEVLVHCSKDSVKDAATEAAKPAAPGETGEM
QVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPALKKVIQKVEAFEHRMYSHPMHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVL
QMDKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTAEQAT
ALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHL
MDVVYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcctttggagacggtttgttcagcgtgtttgacgatgaacaacaaactacc
acaagtaaaaagatacctgcttctctgacaccagaaatagggaaagttataagtaaaaat
ggcaccgacaaagatgctggtccatctgccgcggtcaagagagaggcagacagtgacggt
ggagaggagatggtgtttgggaagaaacctcgacatgagacagtctctgctaatgaccta
aatcttgcagaatttatgccccaagtgaaggtggagcaagttgacactgtggaaggatgc
tcacacgaggtggctcttcctgccagtgatgattataaacccctgaaaccacgagtgggg
aaagcagccaaggagtacccttttgttcttgacccgttccagcgtgaggccatcttatgt
atcgacaacaacgagtctgtgcttgtctctgctcacacctctgccggcaagactgtctgt
gccgaatatgccattgcactggcccttagagagaagcagagagtgatcttcaccagcccc
atcaaagccctctccaaccagaagtacagagagatgtacgaagagttccaggatgtggga
ctgatgactggtgatgtcaccatcaaccccaccgcctcctgccttgtcatgacaacagag
atcctgaggagcatgctgtaccgaggctctgagatcatgagggaggtggcatgggtcgtc
tttgatgagatccattacatgagagatgcagagcgtggtgtggtgtgggaggagaccatc
attcttcttcctgacaatgtgcattacgtcttcctgtcagccaccatccccaatgccagg
cagtttgctgagtggatttgccacctacataagcagccatgccatgtagtctacacagac
taccgtcccactccgctgcaacactacatcttcccttcagggggcgatggactccaccta
gttgttgatgagaatggagacttcagagaggataatttcaacacggctatgcaggtgctg
agagacgcaggggattctgggggcagtggagggggcaagtgggacccgagaggacggaaa
ggaggcactagaggtccatccagcgtgttcaagatagtgaagatgatcatggagaggaac
ttccagcctgttatcattttcagcttcagcaagaaagaatgtgaggcctatgctctacag
gtagccaaactggactttaatagagatgatgagaaacgtctggtggaggaagtcttcaac
aacgcagtggactgtctttctgacgaagacaagaaactcccccaggtggagcatgtgctg
ccgttgttgaagagggggataggaatccatcatggaggcctgctgcccatcctgaaagag
actatagagatccttttctctgaaggcctgatcaaggccctgtttgctacagagacattt
gccatgggcatcaacatgccggctcgcactgtgctcttcaccagcgcacgcaaatttgat
ggcaagaatcaccgctttattacatcaggtgagtacatccagatgtccgggcgagccggt
aggagaggaatggacgacaggggaattgttattttcatggtggacgagaagatgagtcca
gctgtgggcaaacagctactgaagggctcagctgaccctttgaacagtgccttccacctg
acctacaacatggtgctcaacctgctgcgtgtggaggagatcaacccagagtacatgctg
gagaagtctttctaccagttccaacactacagggctttgcctggtgttgtggagaaaatt
aagaattatgaggagcagtaccacagcattgagattcccaatgaagagggcgtggtcact
tactttaaaatcagacagcagctggccaaactgggtaaagagatacaagagttcacccac
aaacccaaatactgcttgcccttcttgcagcctggacgacttgtcaaggtaaaaaatgaa
gatgctgactttggctggggagttgttgtaaacttttgtaagaagtccaacgtgaagacc
agtgcagactctgagccgctgtatgtggtggaggttttggtccattgtagtaaggacagt
gtaaaagatgctgcgactgaggctgctaaacctgctgctccaggggagactggcgaaatg
caggtggtcccagtgatgctccatctcctgacttccatcagctctgttcgcctttacatc
cccaaagacctgaggccctttgacaacagacagctcatgctcaagtctatacaggaggta
cagaaacgtttcccagatggcgttcctctgctcgatcccatagatgacatgggcatcaaa
gaccctgcactgaagaaagttattcagaaagtggaggcctttgagcaccgcatgtactcc
caccccatgcacagtgaccccaacttggaatctgtgtattccctctgtgagaagaaagct
ctgatcgcagcagacgtacgaacggccaagcgagagctgaagaaagctcggaccgtcctg
cagatggacaagctgaagtgcaggaagagagttctgcgacgcctcggcttcgccagtccg
tctgatgtcatcgagatgaaaggacgggtggcctgtgaaattagcagtgctgacgagctc
ctgctgacggagatggtgttcaacggtctcttcaacgatctgacggccgaacaagccacc
gccctgctgtcctgctttgtcttccaggagaatgccagtgagatgccaaaactgactgaa
caactagcagctcctttgagacaaatgcaggagtgtgcaaagcgcatagccaaggtttct
gcagacgccaagctggaggtggacgaggagacttatctaaaccagttcaagcctcacctg
atggatgtggtgtacgcgtgggctaacggcgccacgtttgctcaaatctgcaagatgact
gacgtctttgaagggagcatcatccgctgcatgcgtcgtctggaagaagtcctgagacaa
atgtgttctgcagccaaggccataggtaacaccgaactggagaacaagtttgctgaagga
ataacaaagataaagagagacattgtatttgctgccagtctctacctataa
DBGET
integrated database retrieval system
